Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0384
         (323 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF220422-1|AAG36789.1|  572|Drosophila melanogaster PASILLA spli...    27   7.3  
AE014297-935|ABI31155.1|  572|Drosophila melanogaster CG8144-PH,...    27   7.3  
AE014297-934|ABI31153.1|  572|Drosophila melanogaster CG8144-PG,...    27   7.3  
AE014297-933|AAF54380.2|  572|Drosophila melanogaster CG8144-PF,...    27   7.3  
BT015961-1|AAV36846.1|  771|Drosophila melanogaster RH44882p pro...    26   9.7  
BT001457-1|AAN71212.1|  717|Drosophila melanogaster GM16802p pro...    26   9.7  
AY061061-1|AAL28609.1|  720|Drosophila melanogaster LD03255p pro...    26   9.7  
AE014297-4746|AAN14273.1|  771|Drosophila melanogaster CG11337-P...    26   9.7  
AE014297-4745|AAF57151.2|  771|Drosophila melanogaster CG11337-P...    26   9.7  

>AF220422-1|AAG36789.1|  572|Drosophila melanogaster PASILLA splice
           variant 3 protein.
          Length = 572

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 77  SHHSSLDSF--EIKIEVAVQISNHIHHFSNNYFQHYIV 184
           SH SS +S    I++E+    +NHIHH    Y    +V
Sbjct: 35  SHFSSGESVCSGIEVEIENNNNNHIHHGETTYHMKILV 72


>AE014297-935|ABI31155.1|  572|Drosophila melanogaster CG8144-PH,
           isoform H protein.
          Length = 572

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 77  SHHSSLDSF--EIKIEVAVQISNHIHHFSNNYFQHYIV 184
           SH SS +S    I++E+    +NHIHH    Y    +V
Sbjct: 35  SHFSSGESVCSGIEVEIENNNNNHIHHGETTYHMKILV 72


>AE014297-934|ABI31153.1|  572|Drosophila melanogaster CG8144-PG,
           isoform G protein.
          Length = 572

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 77  SHHSSLDSF--EIKIEVAVQISNHIHHFSNNYFQHYIV 184
           SH SS +S    I++E+    +NHIHH    Y    +V
Sbjct: 35  SHFSSGESVCSGIEVEIENNNNNHIHHGETTYHMKILV 72


>AE014297-933|AAF54380.2|  572|Drosophila melanogaster CG8144-PF,
           isoform F protein.
          Length = 572

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 77  SHHSSLDSF--EIKIEVAVQISNHIHHFSNNYFQHYIV 184
           SH SS +S    I++E+    +NHIHH    Y    +V
Sbjct: 35  SHFSSGESVCSGIEVEIENNNNNHIHHGETTYHMKILV 72


>BT015961-1|AAV36846.1|  771|Drosophila melanogaster RH44882p
           protein.
          Length = 771

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 316 PGLRSPKLGPSPVHKKRFLLKRGT 245
           P  R+  +GPS +H KR  L+ GT
Sbjct: 613 PQQRAQLIGPSGLHMKRIYLETGT 636


>BT001457-1|AAN71212.1|  717|Drosophila melanogaster GM16802p
           protein.
          Length = 717

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 316 PGLRSPKLGPSPVHKKRFLLKRGT 245
           P  R+  +GPS +H KR  L+ GT
Sbjct: 559 PQQRAQLIGPSGLHMKRIYLETGT 582


>AY061061-1|AAL28609.1|  720|Drosophila melanogaster LD03255p
           protein.
          Length = 720

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 316 PGLRSPKLGPSPVHKKRFLLKRGT 245
           P  R+  +GPS +H KR  L+ GT
Sbjct: 562 PQQRAQLIGPSGLHMKRIYLETGT 585


>AE014297-4746|AAN14273.1|  771|Drosophila melanogaster CG11337-PB,
           isoform B protein.
          Length = 771

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 316 PGLRSPKLGPSPVHKKRFLLKRGT 245
           P  R+  +GPS +H KR  L+ GT
Sbjct: 613 PQQRAQLIGPSGLHMKRIYLETGT 636


>AE014297-4745|AAF57151.2|  771|Drosophila melanogaster CG11337-PA,
           isoform A protein.
          Length = 771

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 316 PGLRSPKLGPSPVHKKRFLLKRGT 245
           P  R+  +GPS +H KR  L+ GT
Sbjct: 613 PQQRAQLIGPSGLHMKRIYLETGT 636


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,251,603
Number of Sequences: 53049
Number of extensions: 233969
Number of successful extensions: 426
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 695070486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)