Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0384
         (323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    36   0.007
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    36   0.007
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      36   0.007
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    36   0.007
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    36   0.007
Z92828-6|CAB07338.2|  393|Caenorhabditis elegans Hypothetical pr...    27   3.1  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    27   3.1  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    26   5.4  
Z74027-1|CAA98421.1|  136|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z82284-4|CAB05288.1|  258|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AF038618-6|AAB92067.2|  402|Caenorhabditis elegans Hypothetical ...    25   9.5  
AC024808-3|AAK29925.1|  183|Caenorhabditis elegans Hypothetical ...    25   9.5  
AC006713-1|AAK68407.2|  310|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = +2

Query: 56  IFLTRPISHHSSLDSFEIKIEVAVQISNHIHHFSNNYFQHYIVQMCLK*CKQVTLSNN 229
           IFLTR +  H +   F  K+++   I N    F++  +   ++Q C+K C+++++ NN
Sbjct: 296 IFLTRCLVWHDTFTEFCGKLDILHYIDNET--FNHLIYLQRLLQQCMKHCRELSIPNN 351


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = +2

Query: 56  IFLTRPISHHSSLDSFEIKIEVAVQISNHIHHFSNNYFQHYIVQMCLK*CKQVTLSNN 229
           IFLTR +  H +   F  K+++   I N    F++  +   ++Q C+K C+++++ NN
Sbjct: 296 IFLTRCLVWHDTFTEFCGKLDILHYIDNET--FNHLIYLQRLLQQCMKHCRELSIPNN 351


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = +2

Query: 56  IFLTRPISHHSSLDSFEIKIEVAVQISNHIHHFSNNYFQHYIVQMCLK*CKQVTLSNN 229
           IFLTR +  H +   F  K+++   I N    F++  +   ++Q C+K C+++++ NN
Sbjct: 296 IFLTRCLVWHDTFTEFCGKLDILHYIDNET--FNHLIYLQRLLQQCMKHCRELSIPNN 351


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = +2

Query: 56  IFLTRPISHHSSLDSFEIKIEVAVQISNHIHHFSNNYFQHYIVQMCLK*CKQVTLSNN 229
           IFLTR +  H +   F  K+++   I N    F++  +   ++Q C+K C+++++ NN
Sbjct: 296 IFLTRCLVWHDTFTEFCGKLDILHYIDNET--FNHLIYLQRLLQQCMKHCRELSIPNN 351


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = +2

Query: 56  IFLTRPISHHSSLDSFEIKIEVAVQISNHIHHFSNNYFQHYIVQMCLK*CKQVTLSNN 229
           IFLTR +  H +   F  K+++   I N    F++  +   ++Q C+K C+++++ NN
Sbjct: 296 IFLTRCLVWHDTFTEFCGKLDILHYIDNET--FNHLIYLQRLLQQCMKHCRELSIPNN 351


>Z92828-6|CAB07338.2|  393|Caenorhabditis elegans Hypothetical
           protein C37A5.7 protein.
          Length = 393

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 32  AILTNLRNIFLTRPISHHSSLDSFEIKIEVAVQISNHIHHFSN 160
           AIL+N  N+   R  S  SS   +E K EV      HI++ SN
Sbjct: 333 AILSNTENLLGRRSESQRSSGKEYEEKDEVFRSSMYHINNCSN 375


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 198 NSANKLLYRIIKTLYRVPLFSKNLFLW 278
           N  N+L+Y++  T Y +   S NL++W
Sbjct: 649 NRLNELVYKLESTKYSIGRVSTNLWVW 675


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 2   KLYVPTYLVIAILTNLRNIFLTRPISHHSSLDSF 103
           +LY P YL+  I   +  I + + +SH    +SF
Sbjct: 17  RLYDPLYLIFCIPATIHYIIVLKVVSHLKENNSF 50


>Z74027-1|CAA98421.1|  136|Caenorhabditis elegans Hypothetical
           protein C13G3.1 protein.
          Length = 136

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 317 TRFKVPKIRAQPGP*KKIFTKKGNPVKRFNYSI 219
           T+  +PK+RA   P K+  T    PV+  N ++
Sbjct: 61  TKSALPKVRASIPPLKRALTSPALPVQHLNLNL 93


>Z82284-4|CAB05288.1|  258|Caenorhabditis elegans Hypothetical
           protein T27E7.5 protein.
          Length = 258

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 137 NHIHHFSNNYFQHYIV 184
           NH HHF  NY+   +V
Sbjct: 13  NHAHHFITNYYAKIVV 28


>AF038618-6|AAB92067.2|  402|Caenorhabditis elegans Hypothetical
           protein F42G8.6 protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 183 CRCA*NSANKLLYRIIKTLYRVPLFSKNLFLWTG 284
           C C  N A + L   +  L  +PL S +   W G
Sbjct: 132 CDCTDNVATRYLINDVCVLLNIPLVSGSALRWDG 165


>AC024808-3|AAK29925.1|  183|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.6 protein.
          Length = 183

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 80  HHSSLDSFEIKIEVAVQISNHIHHFSNNYFQH 175
           H S L SF++ IEV V+I   + H   N F H
Sbjct: 42  HFSDLASFQVSIEVCVRILLSLVH---NVFVH 70


>AC006713-1|AAK68407.2|  310|Caenorhabditis elegans Hypothetical
           protein Y119D3A.4 protein.
          Length = 310

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 206 CTIL-GTSALCNVESSYLKNDECGLKFA 126
           C++L G+S  CN E  YL+ + C LK A
Sbjct: 75  CSLLSGSSVWCNNEWKYLEGENC-LKLA 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,037,611
Number of Sequences: 27780
Number of extensions: 126771
Number of successful extensions: 260
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)