Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0384
         (323 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   1.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   1.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   2.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   3.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 291 PNFGDLKPG 317
           PN GD+KPG
Sbjct: 383 PNLGDIKPG 391


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 213 LLYRIIKTLYRVPLFSKNLFLWTG 284
           L+   +K    +P F  +LFLW G
Sbjct: 393 LVRPFLKNPDAIPAFLSSLFLWLG 416


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 62  LTRPISHHSSLDSF 103
           L RPIS H++ DSF
Sbjct: 654 LPRPISCHTTPDSF 667


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 167 SSYLKNDECGLKFALPL 117
           SS   N ECGL+F  P+
Sbjct: 647 SSIETNYECGLRFEDPM 663


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,768
Number of Sequences: 438
Number of extensions: 1614
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)