Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0383
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    31   0.18 
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    27   1.7  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   1.7  
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p...    27   2.3  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   2.3  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    27   3.0  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    26   3.9  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   5.2  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    26   5.2  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    25   6.9  
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    25   6.9  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   9.1  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   9.1  

>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +3

Query: 321 GYVPSHT----GYQPYEPPTADIYTQQSYSAPSSYQDGGYSA 434
           GY P+      G   Y PP  + Y QQ Y+ P  Y  GGY A
Sbjct: 11  GYAPAPPQQAYGGPNYYPPQQN-YPQQGYAPPQGYPQGGYPA 51


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 20  WSWRNANERSWWKRWP 67
           +SW N N   +W RWP
Sbjct: 248 YSWSNRNSGLYWTRWP 263


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 949

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 412  IKMVVTLHRQLLRSLLDIVPAVMERAMDTQQVVQEVTKMMVTAAEWAG 555
            IK+   LHR   R  ++++P V+    D  Q+  E+T +    ++W G
Sbjct: 866  IKLYKVLHRYSQRDCVEVIPDVIRMFEDRLQL--ELTDIARNPSKWPG 911


>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 159

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 318 NGYVPS-HTGYQPYEPPTADIYTQQSYSAPSSYQDGGYSAP 437
           N  +P+ +  YQ    PT       +YSAP S+    +SAP
Sbjct: 119 NTLLPALNDAYQACPKPTRKNGNNDTYSAPQSFNGNEFSAP 159


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 24.6 bits (51), Expect(2) = 2.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 439 QLLRSLLDIVPAVMERAMDTQQVVQEVTKMMVT 537
           QL  SL  I+P V E   DT+  V++ +K  +T
Sbjct: 168 QLSYSLPQIIPVVSESMWDTKAEVKKQSKETMT 200



 Score = 20.6 bits (41), Expect(2) = 2.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 553 GRVTPVTEQQSPHTAVLPPRTTR 621
           G  T VTE Q+P  +++ P   R
Sbjct: 236 GATTFVTEVQAPTLSIMVPLLAR 258


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 510 DHLLSIHSPLHNRWNYIQK*PEQ 442
           DHL SI S + N WN +Q  P +
Sbjct: 261 DHLKSIQSEVSNLWNKLQVSPNE 283


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 537 CNHHFRNFLDHLLSIHSPLHNRWNYIQ 457
           CN HF +F +    I+  L +RW +++
Sbjct: 324 CNEHFEHFKNESGEIYGVLLHRWCFLE 350


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 556 RVTPVTEQQSPHTAVLPPRTTRIHNP 633
           RV P T  Q+ H+  LPP     H+P
Sbjct: 563 RVLPYTRSQAFHSTSLPPSLPSGHSP 588


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +1

Query: 328 YHHTLDISHMSHQLLIFIHNNHTVHQAHI 414
           ++HT+ ++HM +++   I + + +H A I
Sbjct: 188 FNHTVPLTHMDYKMAYNILHEYRIHNADI 216


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 415 KMVVTLHRQLLRSLLDIVPAVMERAMDTQQVVQE-VTKMMVTAAEWAGRVTPVTEQ 579
           KM + L +QLL SLL +      R+++T   ++E  TK+    +     V  VT+Q
Sbjct: 388 KMELLLKKQLLPSLLQLETYYFRRSIETSLELEEYYTKVSPWMSSIVDDVMYVTKQ 443


>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 367 LLIFIHNNHTVHQAHIKMVVTLHRQLLRSLLD 462
           LL+F H N  +H+ HI     + RQL R   D
Sbjct: 84  LLVF-HANQVIHKTHILDATEIFRQLGRHKRD 114


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 407 LISRWWLLCTGSCSGHFWI*FQRLWSGLWILNRW 508
           LI+ WW  C    S  FWI    +  GL+  N W
Sbjct: 341 LITPWWATCCIFTSFVFWIWI--VLPGLYYQNYW 372


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 351 PYEPPTADIYTQQSYSAPSSYQDGGYSA 434
           P +P         SYS PSS+QD  YS+
Sbjct: 146 PPQPSVRRPRFYSSYSYPSSHQDPAYSS 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,100
Number of Sequences: 5004
Number of extensions: 30825
Number of successful extensions: 129
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)