Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0383
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0132 + 14711645-14711839,14712641-14712970,14713689-147137... 32 0.44
11_01_0024 + 163588-163897,164303-164406 30 1.3
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 29 2.3
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998... 29 2.3
03_06_0471 + 34169562-34169892,34170121-34170347 29 3.1
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 29 3.1
05_05_0201 + 23206859-23206998,23207858-23207936,23208121-232082... 27 9.4
03_02_0120 - 5728572-5728712,5728812-5728916,5729178-5729441,572... 27 9.4
>03_03_0132 +
14711645-14711839,14712641-14712970,14713689-14713751,
14713833-14713906,14714004-14714099,14714705-14714759,
14714867-14714971,14715054-14715135,14715450-14715562,
14715717-14716118
Length = 504
Score = 31.9 bits (69), Expect = 0.44
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 330 PSHTGYQPYEPPTADIYTQQSYSAPSSY-QDGGYSAPAA 443
P ++GY P P A Y Q YS+P Y GG+SAPAA
Sbjct: 434 PGNSGYAP--APGA--YPGQMYSSPMQYGASGGFSAPAA 468
>11_01_0024 + 163588-163897,164303-164406
Length = 137
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +1
Query: 274 VVEVGDLLDI-HLLNQMDMYHHTLDISHMSHQLL--IFIHNNH 393
V++ GDL+D HLL + H + H+SH+LL +F+++ H
Sbjct: 26 VLDNGDLVDDDHLLEHDEQLHVHYLLGHVSHKLLDTLFLYSTH 68
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 342 GYQ--PYEPPTADIYTQQSY-SAPSSYQDGGYSAPAAAQ 449
GYQ P +P + Y Q Y S P+S Q G +APAA Q
Sbjct: 604 GYQGAPADPNYGNAYPQAGYGSTPASGQAGYAAAPAAGQ 642
>01_06_1127 - 34699119-34699360,34699446-34699689,34699773-34699844,
34700123-34700218,34700322-34700438,34700520-34700676,
34700770-34700867,34700940-34701098,34701169-34701339,
34701402-34701479,34701548-34701667,34701968-34702085,
34702216-34702346,34702452-34702528,34702858-34702969,
34703057-34703239,34703416-34703517,34703617-34703718,
34703817-34703912,34704481-34704558,34704652-34704744,
34704817-34704938,34705035-34705116,34705204-34705278,
34705385-34705645,34705730-34705854,34705956-34706031,
34706128-34706277,34706359-34706454,34706707-34706814,
34706956-34707056,34707727-34707814,34707894-34708006,
34708278-34708383,34709143-34709247,34709356-34709427,
34709931-34709971,34710067-34710175,34710252-34710317,
34710404-34710540,34710788-34710890,34711416-34711535,
34711707-34711820,34711923-34712008,34712088-34712170,
34713283-34713347,34713444-34713621,34713697-34713776,
34714926-34715049,34715140-34715245,34715399-34715561
Length = 1966
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = -1
Query: 504 LLSIHSPLH-NRWNYIQK*PEQLPVQSNHHLDMSLVHCMIVVYKYQQLVAHMADIQCVMV 328
L+++ PL +RW PE L V++ D+ +V C+I + K Q + D+ ++
Sbjct: 1584 LINLLRPLDPSRWPSPTP-PESLAVKNQKFSDL-VVKCLIKLTKVLQSTIYEVDLDRILQ 1641
Query: 327 HIHL-IEEVDVQQI 289
IH+ ++E+ +++I
Sbjct: 1642 SIHIYLQELGMEEI 1655
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 318 NGYVPSHTGYQPYEPPTADIYTQQSYSAPSSYQDGGYSAP 437
+GY PS GY P P + Y QQ P+ Y G+ P
Sbjct: 70 SGYPPSQGGYPPGAYPPSG-YPQQPGYPPAGYPGHGHGPP 108
>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 391 HTVHQAHIKMVVTLHRQLLRSLLDIVPAVMERAMDT 498
+T+H I + HR L LL + VME A+DT
Sbjct: 912 YTLHDISISKLCAAHRCFLLRLLPVTLLVMESAVDT 947
>05_05_0201 +
23206859-23206998,23207858-23207936,23208121-23208219,
23208561-23208674,23208762-23208910,23209010-23209091,
23209170-23209255,23209520-23209750,23209830-23210727
Length = 625
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 345 YQPYEPPTADIYTQQSYSAPSSYQDGGYSAPAAAQV 452
YQ PP A + +Y APSS Y+AP QV
Sbjct: 505 YQMQNPPVASVAPTNTYPAPSS----PYAAPPRQQV 536
>03_02_0120 -
5728572-5728712,5728812-5728916,5729178-5729441,
5729809-5729958,5730070-5730150,5730481-5730597,
5730679-5730831,5731426-5731569,5731773-5731802,
5732070-5732430,5732682-5732849,5733371-5733600,
5734088-5734194,5734275-5734623
Length = 799
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 330 PSHTGYQPYEPPT--ADIYTQQSYSAPSSYQDGGYSAPAAA 446
P Y Y PPT A YTQQ+Y+ PS+ +APA A
Sbjct: 738 PQAAAYGAY-PPTYPAQAYTQQTYAQPSAM---AVAAPAPA 774
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,921,979
Number of Sequences: 37544
Number of extensions: 240327
Number of successful extensions: 840
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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