Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0383
(633 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21305| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_35374| Best HMM Match : Nucleoplasmin (HMM E-Value=8.5) 30 1.8
SB_43207| Best HMM Match : MCPsignal (HMM E-Value=1.5e-33) 29 4.1
SB_10408| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_50303| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-25) 28 5.5
SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13) 28 7.2
SB_21766| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-15) 27 9.6
SB_15217| Best HMM Match : Sec23_helical (HMM E-Value=2.9) 27 9.6
SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_21305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 259 DLKAHVVEVGDLLDIHLLNQMDMYHHTLDISHMSHQLLIFIH-NNHTVHQAHI 414
D+ +H ++V D+ H L +DM HTL + HMS L +H ++HT+ H+
Sbjct: 80 DMSSHTLQVIDMSS-HTLQVIDMSSHTLQVLHMSSHTLQVLHMSSHTLQVLHM 131
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 259 DLKAHVVEVGDLLDIHLLNQMDMYHHTLDISHMSHQLLIFIH-NNHTVHQAHI 414
D+ +H ++V D+ H L + M HTL + HMS L I ++HT+ H+
Sbjct: 10 DMSSHTLQVIDMSS-HTLQVLHMSSHTLQVLHMSSNTLQVIDMSSHTLQVLHM 61
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 259 DLKAHVVEVGDLLDIHLLNQMDMYHHTLDISHMSHQLLIFIH-NNHTVHQAHI 414
D+ +H ++V + H L + M HTL + HMS L +H ++HT+ H+
Sbjct: 100 DMSSHTLQVLHMSS-HTLQVLHMSSHTLQVLHMSSHTLQVLHMSSHTLQVLHM 151
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 262 LKAHVVEVGDLLDIHLLNQMDMYHHTLDISHMSHQLLIFIH 384
+ +H ++V D+ H L +DM HTL + HMS L +H
Sbjct: 1 MSSHTLQVIDMSS-HTLQVIDMSSHTLQVLHMSSHTLQVLH 40
Score = 31.1 bits (67), Expect = 0.78
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 262 LKAHVVEVGDLLDIHLLNQMDMYHHTLDISHM-SHQLLIFIHNNHTVHQAHI 414
+ +H ++V + H L + M HTL + HM SH L + ++HT+ H+
Sbjct: 121 MSSHTLQVLHMSS-HTLQVLHMSSHTLQVLHMSSHTLQVIDMSSHTLQVLHM 171
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 259 DLKAHVVEVGDLLDIHLLNQMDMYHHTLDISHM-SHQLLIFIHNNHTV 399
D+ +H ++V + H L +DM HTL + M SH L + ++HT+
Sbjct: 50 DMSSHTLQVLHMSS-HTLQVIDMSSHTLQVIDMSSHTLQVIDMSSHTL 96
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 262 LKAHVVEVGDLLDIHLLNQMDMYHHTLDISHM-SHQLLIFIHNNHTV 399
+ +H ++V + + L +DM HTL + HM SH L + ++HT+
Sbjct: 31 MSSHTLQVLHMSS-NTLQVIDMSSHTLQVLHMSSHTLQVIDMSSHTL 76
>SB_35374| Best HMM Match : Nucleoplasmin (HMM E-Value=8.5)
Length = 285
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 271 HVVEVGDLLDIHLLNQMDMY--HHTLDISHMSHQLLIFIHNNHTVHQAHIKMVVTLHRQL 444
H V + LLDIH + ++ HH + I + + I +H+ I + +HR +
Sbjct: 36 HRVVIPGLLDIHWVEISGLFDIHHVV-IPGLFDIHRVVIPGLFDIHRVVIPGLFDIHRVV 94
Query: 445 LRSLLDIVPAVMERAMDTQQVV 510
+ L DI V+ D +VV
Sbjct: 95 ISGLFDIYRVVIPGLFDIYRVV 116
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +1
Query: 262 LKAHVVEVGDLLDIHLLNQMDMYH-HTLDISHMSHQLLIFIHNNHTVHQAHIKMVVTLHR 438
L H V + L DIH + + H ++IS + + I +H+ I + +HR
Sbjct: 22 LDIHQVVIPGLFDIHRVVIPGLLDIHWVEISGLFDIHHVVIPGLFDIHRVVIPGLFDIHR 81
Query: 439 QLLRSLLDIVPAVMERAMDTQQVV 510
++ L DI V+ D +VV
Sbjct: 82 VVIPGLFDIHRVVISGLFDIYRVV 105
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +1
Query: 271 HVVEVGDLLDIHLLNQMDMYH-HTLDISHMSHQLLIFIHNNHTVHQAHIKMVVTLHRQLL 447
H V + +LLDIH + ++ H + I + + I +H+ I + +HR ++
Sbjct: 146 HRVVIPELLDIHQVVIPGLFDIHRVVIPGLLDIHWVEIPGLFDIHRVVIPGLFDIHRVVI 205
Query: 448 RSLLDIVPAVMERAMDTQQVVQEV 519
L DI V+ + D + +EV
Sbjct: 206 PGLFDIHQVVIPGSFDIHRGSREV 229
>SB_43207| Best HMM Match : MCPsignal (HMM E-Value=1.5e-33)
Length = 321
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 439 QLLRSLLDIVPAVMERAMDTQQVVQEVTKMMVTAAEWAGRVTPVTEQQSPHTAVLPPRTT 618
Q +R+ ++ A +A + E+ + T A A R+ T QQS + + +
Sbjct: 136 QAMRTQVEHAEATASQAEAADGALDEIVAAIRTIASMAERIADATAQQSDAVSEIRGHSE 195
Query: 619 RIH 627
RIH
Sbjct: 196 RIH 198
>SB_10408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 325 MYHHTLDISHMSHQLLIFIHNN--HTVHQAHIKMVVTLHRQLLRSLLDIV 468
+YH L +S +S ++I I+ N H + + + + H +LL+S ++
Sbjct: 110 LYHRHLHLSKLSKSVIIIIYQNHQHPLSSSSSFIKIRYHHRLLKSSKSVI 159
>SB_50303| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-25)
Length = 319
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +1
Query: 397 VHQAHIKMVVTLHRQLLRSLLDIVPAVMERAMDTQQVVQEVTKMMVTAAEWAGRVTPVTE 576
++Q + V++ +++L +V + E + TQQ + + ++VT AE + +
Sbjct: 146 LNQPIVAKEVSIETTPVQNLHAVVQSAAEELIVTQQPMSQSNAVVVTLAETVAAQQALLQ 205
Query: 577 QQSPHTAVLPPRTT 618
TAV+P T
Sbjct: 206 SMLDGTAVIPTSQT 219
>SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +1
Query: 397 VHQAHIKMVVTLHRQLLRSLLDIVPAVMERAMDTQQVVQEVTKMMVTAAEWAGRVTPVTE 576
++Q + V++ +++L +V + E + TQQ + + ++VT AE + +
Sbjct: 366 LNQPIVAKEVSIETTPVQNLHAVVQSASEELIVTQQPMSQSNAVVVTLAETVAAQQALLQ 425
Query: 577 QQSPHTAVLPPRTT 618
TAV+P T
Sbjct: 426 SMLDGTAVIPTSQT 439
>SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)
Length = 470
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/65 (23%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 400 HQAHIKMVVTLHRQLLRSLL-DIVPAVMERAMDTQQVVQEVTKMMVTAAEWA-GRVTPVT 573
H+A+ ++ + +R + ++ ++ + E+ T+++ EV ++ + GRV+P+
Sbjct: 139 HEAYEEIALPDYRTIAEQIIKNLQNELSEQKYKTEELEDEVESLLPRGKPVSTGRVSPMA 198
Query: 574 EQQSP 588
QQSP
Sbjct: 199 RQQSP 203
>SB_21766| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-15)
Length = 281
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +1
Query: 397 VHQAHIKMVVTLHRQLLRSLLDIVPAVMERAMDTQQVVQEVTKMMVTAAEWAGRVTPVTE 576
++Q + V++ +++L +V + E + TQQ + + ++VT AE + +
Sbjct: 108 LNQPIVAKEVSIETTPVQNLHAVVQSAAEELIVTQQPMSQSNAVVVTLAENVAAQQALLQ 167
Query: 577 QQSPHTAVLPPRTT 618
TAV+P T
Sbjct: 168 SMLDGTAVIPTSQT 181
>SB_15217| Best HMM Match : Sec23_helical (HMM E-Value=2.9)
Length = 200
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +1
Query: 397 VHQAHIKMVVTLHRQLLRSLLDIVPAVMERAMDTQQVVQEVTKMMVTAAEWAGRVTPVTE 576
++Q + V++ +++L +V + E + TQQ + + ++VT AE + +
Sbjct: 27 LNQPIVAKEVSIETTPVQNLHAVVQSAAEELIVTQQPMSQSNAVVVTLAENVAAQQALLQ 86
Query: 577 QQSPHTAVLPPRTT 618
TAV+P T
Sbjct: 87 SMLDGTAVIPTSQT 100
>SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1801
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -1
Query: 423 HHLDMSLVHCMIVVYKYQQLVAHMADIQCVMVHIHLIEEVDVQQIPYLHHVGL--QIC 256
H + LV ++ VY + H+ C + HL+ ++ V++ Y H V + Q+C
Sbjct: 1368 HFMSPFLVDILVQVYLHTSPCRHLGT--CKSTYTHLLVDILVRRSTYTHLVDIMVQVC 1423
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,101,406
Number of Sequences: 59808
Number of extensions: 251811
Number of successful extensions: 1074
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -