Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0383
(633 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 32 0.004
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 23 2.5
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 2.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.7
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 21 7.5
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 21 7.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.9
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 32.3 bits (70), Expect = 0.004
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Frame = +1
Query: 313 NQMDMYHHTLDISHMSHQLLIFIHNNHTVHQAHIKMVVTLHR--QLLRSLLDIVPAVMER 486
NQ HH + +S + I + + +H A + + + +L I+P V +
Sbjct: 914 NQQHFPHHQIQVSTSAGLQTIRLSGHSVLHSAQSVVASSASNVTNVTTNLTTILPPVKVQ 973
Query: 487 AMDTQQVVQEVTKMMVTAAEWAGRV---TPVTEQQSPHTAVLPPRT 615
+ Q Q+ + AG+ T +QQSP VLP +T
Sbjct: 974 SQQQSQQSQQQQQQQTIVTNQAGKSILQTANIKQQSPQQHVLPGKT 1019
Score = 23.4 bits (48), Expect = 1.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 478 MERAMDTQQVVQEVTKMMVTAAEWAGRVTPVTEQQSPH 591
++R + QQ + + M A+ G+ V QQSPH
Sbjct: 1066 LKRVVTNQQQSIQTSGMQRIIAQIGGKPIAVQIQQSPH 1103
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.0 bits (47), Expect = 2.5
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 534 NHHFRNFLDHLLSIHSPLHNRWNYIQK*PEQLP 436
N+++ N+ ++ + PLH NYI++ P +P
Sbjct: 321 NYNYNNYNNN----YKPLHYNINYIEQIPVPVP 349
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.0 bits (47), Expect = 2.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 357 EPPTADIYTQQSYSAPSSYQDGGYSAPAAA 446
+PP A +Y SS +GG ++P +A
Sbjct: 558 KPPVATMYGSDEEIINSSNDEGGKTSPNSA 587
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 124 VLCSHHRVPHHHMLP 168
VL HHR P +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 124 VLCSHHRVPHHHMLP 168
VL HHR P +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 124 VLCSHHRVPHHHMLP 168
VL HHR P +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 124 VLCSHHRVPHHHMLP 168
VL HHR P +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 124 VLCSHHRVPHHHMLP 168
VL HHR P +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 124 VLCSHHRVPHHHMLP 168
VL HHR P +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 7.5
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -1
Query: 531 HHFRNFLDHLLSIHSPLHNRWNYIQK*PEQLPV 433
H+ N+ ++ + + L+ NYI++ P +PV
Sbjct: 91 HNNNNYNNNNYNNYKKLYYNINYIEQVPVPIPV 123
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 21.4 bits (43), Expect = 7.5
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = -1
Query: 393 MIVVYKYQQLVAHMAD 346
++++Y Y Q+V+H+ +
Sbjct: 225 ILIIYYYSQIVSHVVN 240
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 124 VLCSHHRVPHHHMLP 168
VL HHR P +++P
Sbjct: 346 VLNFHHRTPDRYVMP 360
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 124 VLCSHHRVPHHHMLP 168
VL HHR P +++P
Sbjct: 346 VLNFHHRTPDRYVMP 360
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,495
Number of Sequences: 438
Number of extensions: 2165
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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