Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0383
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2...    29   2.6  
At2g45560.1 68415.m05665 cytochrome P450 family protein                29   3.4  
At5g06140.1 68418.m00683 phox (PX) domain-containing protein sim...    28   4.5  
At1g70985.1 68414.m08189 hydroxyproline-rich glycoprotein family...    28   4.5  
At1g23000.1 68414.m02874 heavy-metal-associated domain-containin...    28   4.5  
At3g61570.1 68416.m06896 intracellular protein transport protein...    28   5.9  
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei...    27   7.8  
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei...    27   7.8  

>At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2)
           (YLS6) identical to SP|O64637 Cytochrome P450 76C2 (EC
           1.14.-.-) {Arabidopsis thaliana}, cDNA YLS6 mRNA for
           cytochrome P450 (CYP76C2), partial cds GI:13122289
          Length = 512

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 372 QQLVAHMADIQCVMVHIHLIEEVDVQQIPYLHHV 271
           + +V   A+I CV+    ++EE D+  +PYL  V
Sbjct: 333 ETMVKAQAEIDCVIGQKGVVEESDISALPYLQAV 366


>At2g45560.1 68415.m05665 cytochrome P450 family protein
          Length = 512

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 351 ADIQCVMVHIHLIEEVDVQQIPYLHHV 271
           A+I CV+    ++EE D+ ++PYL  V
Sbjct: 339 AEIDCVIGQNGIVEESDISKLPYLQAV 365


>At5g06140.1 68418.m00683 phox (PX) domain-containing protein
           similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
           contains Pfam profile PF00787: PX domain
          Length = 402

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 337 TLDISHMSHQLLIFIHNNHTVHQAHIKMVVTLHRQLLRSLLDIVPAV 477
           T D   + H +   + N+ T  Q H   +V  HR+L +SLLD   AV
Sbjct: 186 TADYEKLKHYIFE-LENHLTEAQKHAYRLVKRHRELGQSLLDFGKAV 231


>At1g70985.1 68414.m08189 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 135

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 312 QSNGYVPSHTGYQPYEPPTADIYTQQSYSAPSSY---QDGGYSAP 437
           Q  GY P  TGY  Y PP++      +Y +P  Y     GGY+ P
Sbjct: 46  QPAGYYPQPTGY--YPPPSSS--NVPNYPSPPYYGGNPSGGYNGP 86


>At1g23000.1 68414.m02874 heavy-metal-associated domain-containing
           protein similar to farnesylated protein ATFP3
           [GI:4097547]; contains PF00403 Heavy-metal-associated
           domain
          Length = 358

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 324 YVPSHTGYQPYEPPTADIYTQQS 392
           Y PS   Y PY P  +D Y QQS
Sbjct: 313 YTPSPYSYYPYYPYASDQYQQQS 335


>At3g61570.1 68416.m06896 intracellular protein transport protein
           USO1-related contains weak similarity to intracellular
           protein transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]
          Length = 712

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +1

Query: 481 ERAMDTQQVVQEVTKMMV----TAAEWAGRVTPVTEQQSPHTAVLPPRTTRIH 627
           ER   + +  ++VT  ++     AAEW  RVT V E  +    VL    TR++
Sbjct: 504 ERLESSNKEKEDVTSKLLHAEKVAAEWKNRVTKVEEDNAKVRRVLEQSMTRLN 556


>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 327 VPSHTGYQPYEPPTADIYTQQSYSAPSSYQDG--GYSAP 437
           +PS+ G   Y PPT   Y  ++   P+SY  G   Y  P
Sbjct: 188 IPSYDGSGSYPPPTG--YGMEAVPPPTSYSGGPPSYGGP 224


>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 327 VPSHTGYQPYEPPTADIYTQQSYSAPSSYQDG--GYSAP 437
           +PS+ G   Y PPT   Y  ++   P+SY  G   Y  P
Sbjct: 188 IPSYDGSGSYPPPTG--YGMEAVPPPTSYSGGPPSYGGP 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,727,249
Number of Sequences: 28952
Number of extensions: 171160
Number of successful extensions: 694
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)