Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0382
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   1.7  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   6.8  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   6.8  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   9.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.0  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 564 STQSGRSAAMNSSQSMRPLPFLSNR 490
           S +SG+ + + S+ +  P P LSNR
Sbjct: 118 SFESGKPSGVISTNTSPPSPILSNR 142


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/23 (34%), Positives = 8/23 (34%)
 Frame = +3

Query: 414 RGXXXXXXXXTPNSTHPGWRWAP 482
           RG        TP     GW W P
Sbjct: 319 RGIRVVLEVDTPAHAGNGWNWGP 341


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 512 RYRSCRTDPPRR 477
           R R+ RT+PPRR
Sbjct: 234 RPRTSRTEPPRR 245



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 71  SRRFSRISPGRETPDRNLPHYGPR 142
           SR   +   GRE   R  P+Y PR
Sbjct: 213 SRSKRQPKTGREDQTRRNPYYRPR 236


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/23 (30%), Positives = 9/23 (39%)
 Frame = +3

Query: 414 RGXXXXXXXXTPNSTHPGWRWAP 482
           RG         P+    GW+W P
Sbjct: 296 RGVRIIIEIDAPSHAGNGWQWGP 318


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = +1

Query: 82  QSYQPWTGDARSEPAPLRTP 141
           + + PW    +  P+P  TP
Sbjct: 62  KGFHPWKKSPQGAPSPSSTP 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,286
Number of Sequences: 336
Number of extensions: 3233
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)