Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0381
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    30   0.34 
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    28   1.4  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    27   2.4  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   4.2  

>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 260 DERVRELVRRYNYTLNPRGVYEAVRY 337
           D+ VR +++ Y Y + PR VYE  +Y
Sbjct: 865 DDTVRNILQLYYYKVTPRAVYEMQKY 890


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 134 LQEGQFNPALRYMTGVTTQEAAYYLYNNESLAPTYAVSEHWVDERVRELVRRY 292
           L E +  P    +T  T ++AAYY    E      A+   + D +VRE +RRY
Sbjct: 9   LGELETRPFSEGITRFTKEQAAYYAEQKEK-DRIKALKIPYEDSKVREYLRRY 60


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 398 LLSDFLYRAPTDRLVKLLLGRRVPVYMYVMNTTVEALR 511
           +L DFL +AP D+L K  L   +PV    M+  + +L+
Sbjct: 6   VLKDFLSQAPIDKL-KATLSGHLPVSCITMDAKITSLQ 42


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 167 YMTGVTTQEAAYYLYNNESLAPTYAVSEHWVDER 268
           YMT +     A  L+ N S    +   E W+DE+
Sbjct: 207 YMTSLQFCHFAQELFQNSSKVKVFVHDEKWIDEQ 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,774
Number of Sequences: 5004
Number of extensions: 35322
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)