Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0381
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0170 + 15310240-15310397,15310523-15310605,15310689-153106...    31   0.82 
02_04_0564 + 23905196-23905413,23905631-23905766,23906005-239060...    30   1.9  
07_01_0769 + 5908942-5908946,5909085-5909666,5910370-5910429,591...    29   4.4  
05_07_0002 - 26979873-26980823                                         28   5.8  

>09_04_0170 +
           15310240-15310397,15310523-15310605,15310689-15310697,
           15310852-15310940,15311514-15311587,15311731-15311781,
           15311887-15311963,15313865-15314463
          Length = 379

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 487 EHHGRGAAAGRVETVPARHKMA-VPHRSAL 573
           +H G GAAA   + +PARH +   P  SAL
Sbjct: 253 QHDGHGAAAAAAQLIPARHSLGHTPTTSAL 282


>02_04_0564 +
           23905196-23905413,23905631-23905766,23906005-23906082,
           23906627-23906710,23906826-23906894,23906974-23907057,
           23907143-23907301,23907922-23908008,23908398-23908502,
           23908579-23908701,23908780-23908932,23909248-23909313,
           23909398-23909499
          Length = 487

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 542 CRAGTVSTRPAAAPLPWC 489
           CRAG V  R AAA  PWC
Sbjct: 18  CRAGGVPARAAAAHRPWC 35


>07_01_0769 +
           5908942-5908946,5909085-5909666,5910370-5910429,
           5910635-5910674,5910767-5910860,5911582-5911952
          Length = 383

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 219 SRWRPLTRCRSTGWT 263
           SRWRP   CR  GWT
Sbjct: 269 SRWRPEGHCRRLGWT 283


>05_07_0002 - 26979873-26980823
          Length = 316

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 478 VRDEHHGRGAAAGRVETVPARHKMAVPHRSALYG 579
           VRD     G A G   T+ A HK   PH S L+G
Sbjct: 285 VRDVSTATGVAEG---TITAAHKELAPHASVLFG 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,798,944
Number of Sequences: 37544
Number of extensions: 269225
Number of successful extensions: 848
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)