Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0381
(665 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 30 1.7
Z81521-5|CAE17802.1| 657|Caenorhabditis elegans Hypothetical pr... 29 2.2
U88167-10|AAB42222.1| 804|Caenorhabditis elegans Hypothetical p... 29 2.2
U88167-9|AAK68288.1| 890|Caenorhabditis elegans Hypothetical pr... 29 2.2
M96145-1|AAA28057.1| 562|Caenorhabditis elegans elastase protein. 29 3.0
AF016680-3|AAB66165.2| 562|Caenorhabditis elegans Abnormal gut ... 29 3.0
AF045643-4|AAC02597.3| 529|Caenorhabditis elegans Ligand-gated ... 28 5.2
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z79598-7|CAB01866.1| 386|Caenorhabditis elegans Hypothetical pr... 27 9.1
AF145375-1|AAD39814.1| 386|Caenorhabditis elegans TAB1-like pro... 27 9.1
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 84 PSYHSSPGSDTFSARNGPQGMNP 16
P YHS P D FS RN P+ +P
Sbjct: 131 PRYHSGPREDRFSDRNPPREHSP 153
>Z81521-5|CAE17802.1| 657|Caenorhabditis elegans Hypothetical
protein F32A11.7 protein.
Length = 657
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 652 WLKVPVVIGPRLSLEPVLIGKELLV 578
WL VPV++ PRL L PV + LLV
Sbjct: 524 WLLVPVILSPRL-LSPVAVNPFLLV 547
>U88167-10|AAB42222.1| 804|Caenorhabditis elegans Hypothetical
protein D2092.1a protein.
Length = 804
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 604 VLIGKELLVHKGRSGEEQPFYVVRVLSPRVQPQRLYR 494
++ G E LV K G+ PF V+ +++ RVQ +Y+
Sbjct: 450 LVFGAEDLVAKDFGGKSDPFAVLELVNTRVQTNTIYK 486
>U88167-9|AAK68288.1| 890|Caenorhabditis elegans Hypothetical
protein D2092.1b protein.
Length = 890
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 604 VLIGKELLVHKGRSGEEQPFYVVRVLSPRVQPQRLYR 494
++ G E LV K G+ PF V+ +++ RVQ +Y+
Sbjct: 536 LVFGAEDLVAKDFGGKSDPFAVLELVNTRVQTNTIYK 572
>M96145-1|AAA28057.1| 562|Caenorhabditis elegans elastase protein.
Length = 562
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 383 DQYIHLLSDFLYRAPTDRLVKLLLGRRVPVYMYVMN 490
D+Y LLSD + P R + + R+ PV+ Y M+
Sbjct: 397 DRYSELLSDITFNVPILREITSRVERKTPVWTYRMD 432
>AF016680-3|AAB66165.2| 562|Caenorhabditis elegans Abnormal gut
esterase protein 1 protein.
Length = 562
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 383 DQYIHLLSDFLYRAPTDRLVKLLLGRRVPVYMYVMN 490
D+Y LLSD + P R + + R+ PV+ Y M+
Sbjct: 397 DRYSELLSDITFNVPILREITSRVERKTPVWTYRMD 432
>AF045643-4|AAC02597.3| 529|Caenorhabditis elegans Ligand-gated ion
channel protein 30 protein.
Length = 529
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 503 ALRLDAWRQYPHDIKWLFLTGAPFMDQEFFPNKYRLERQAWTNNDRNLEPFSL 661
ALR +W+ P I+WL A + + P +R ++ A++ N+ N++ SL
Sbjct: 378 ALRNPSWQSVPWYIRWL---AAKKLFCCYVPKSFRYDKDAYSRNN-NVQAISL 426
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 654 NGSRFLSLLVHACLSSRYLLGKNSWSIKGAPVRNSHFMSCGYCLHASSRSAS 499
NG+ L + + +CL R L +N+ + G + +C Y H RS S
Sbjct: 1230 NGNGHLCVSMSSCLDDRSLCDENADCVPGE--AGHYVCNCHYGYHGDGRSCS 1279
>Z79598-7|CAB01866.1| 386|Caenorhabditis elegans Hypothetical
protein C44H4.5 protein.
Length = 386
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 627 VHACLSSRYLLGKNSWSIKGAPVRNSHFMSCGYCLH 520
VH+C RY KN PV+N+ F+SC C+H
Sbjct: 21 VHSC---RYSKQKN-------PVQNNDFLSCSMCIH 46
>AF145375-1|AAD39814.1| 386|Caenorhabditis elegans TAB1-like
protein TAP-1 protein.
Length = 386
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 627 VHACLSSRYLLGKNSWSIKGAPVRNSHFMSCGYCLH 520
VH+C RY KN PV+N+ F+SC C+H
Sbjct: 21 VHSC---RYSKQKN-------PVQNNDFLSCSMCIH 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,526,641
Number of Sequences: 27780
Number of extensions: 204723
Number of successful extensions: 585
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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