Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0381
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    27   0.16 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          26   0.37 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      26   0.37 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.86 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.6  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 17/95 (17%), Positives = 32/95 (33%)
 Frame = +2

Query: 323 EAVRYMYTXXXXXXXXXXXRDQYIHLLSDFLYRAPTDRLVKLLLGRRVPVYMYVMNTTVE 502
           EA+ + YT           +     ++ D+ +  P+    +L   R + VY Y       
Sbjct: 425 EAITFQYTDWEEVYNGYIYQKMVADVVGDYFFICPSIHFAQLFADRGMKVYYYFFTQRTS 484

Query: 503 ALRLDAWRQYPHDIKWLFLTGAPFMDQEFFPNKYR 607
                 W    H  +  ++ G P      + +K R
Sbjct: 485 TNLWGEWMGVLHGDEVEYVFGHPLNKSLKYSDKER 519


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 531 TRTT*NGCSSPERPLWTRSSFPI 599
           T T  NG   P+RP+W  S+FPI
Sbjct: 298 TMTYSNGLPFPQRPIW--SNFPI 318


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 531 TRTT*NGCSSPERPLWTRSSFPI 599
           T T  NG   P+RP+W  S+FPI
Sbjct: 298 TMTYSNGLPFPQRPIW--SNFPI 318


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 11/53 (20%), Positives = 21/53 (39%)
 Frame = +2

Query: 323 EAVRYMYTXXXXXXXXXXXRDQYIHLLSDFLYRAPTDRLVKLLLGRRVPVYMY 481
           EA+ + YT           +     ++ D+ +  P+    +L   R + VY Y
Sbjct: 425 EAITFQYTDWEEVYNGYIYQKMVADVVGDYFFICPSIHFAQLFADRGMKVYYY 477


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 14  VGFIPWGPFLAENVSLPGDE--WYEGWR 91
           V F+P   +  +N+  P  +  WY+GW+
Sbjct: 188 VAFVPISGWHGDNMLEPSPKTPWYKGWK 215


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 426 GARYRKSDRRWMYWSRAA 373
           G+ Y  S +RW Y +RAA
Sbjct: 241 GSTYGVSGQRWQYAARAA 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,295
Number of Sequences: 438
Number of extensions: 2891
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)