Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0381
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71530.2 68414.m08270 protein kinase family protein contains ...    28   4.9  
At1g71530.1 68414.m08269 protein kinase family protein contains ...    28   4.9  
At1g13500.1 68414.m01583 hypothetical protein                          28   6.4  

>At1g71530.2 68414.m08270 protein kinase family protein contains
           Serine/Threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 463

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +3

Query: 552 CSSPERPLWTRSSFPISTGSRDRR--GPITTGTLSHF 656
           C SP    W R++ P++T  +      P+   T +HF
Sbjct: 364 CGSPSEDYWRRATLPLATSFKPSHPYKPVLAETFNHF 400


>At1g71530.1 68414.m08269 protein kinase family protein contains
           Serine/Threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 463

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +3

Query: 552 CSSPERPLWTRSSFPISTGSRDRR--GPITTGTLSHF 656
           C SP    W R++ P++T  +      P+   T +HF
Sbjct: 364 CGSPSEDYWRRATLPLATSFKPSHPYKPVLAETFNHF 400


>At1g13500.1 68414.m01583 hypothetical protein 
          Length = 386

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 613 LEPVLIGKELLVHKGRSGEEQPFYVVRVLSPRVQPQRLYR 494
           L+P  I ++  +H+GRS  ++ F+   V S  + PQ L R
Sbjct: 134 LDPFDINQQFEIHQGRSSTKK-FFATSVASDGIPPQFLTR 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,075,374
Number of Sequences: 28952
Number of extensions: 190864
Number of successful extensions: 557
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)