Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0380
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.31 
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    25   8.9  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -3

Query: 529 NWNCKFVYYYDCILFFYNHKFRQDYTIKNINKDKQYLIYSQFDNRRQEQ 383
           NW C  +  +   +      FR+ Y + NI   K   +YS  ++ +Q +
Sbjct: 188 NWTCLSIENFGISIHVITKNFREYYKLDNIEHVKDETLYSDLEHGKQSR 236


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 463 QDYTIKNINKDKQYLIYSQFDNRRQEQKFDNK*YACVCAS 344
           ++ +I  I KD++Y +Y Q D +    K  +K  A   AS
Sbjct: 208 ENVSISVIGKDEKYTLYDQNDTKEWLDKLGDKGPAAARAS 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,519
Number of Sequences: 5004
Number of extensions: 63114
Number of successful extensions: 132
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)