Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0380
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine rece...    28   8.3  

>U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical
           protein F10D7.1 protein.
          Length = 656

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 365 VCMRVCVKYMVC-SVCNVFFIDLMYLLCIILKNY*HCALLLYILYKCGKF 219
           V +R+CV  + C ++C++ +I   YL+ I   ++ +CA LL  + K   F
Sbjct: 50  VNLRLCVFLLACDALCSLCYI-FTYLINIFFSHFSNCASLLLEVIKMSTF 98


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 145 IPKFKIMSHNLQHPCLRTLLLNNAYPCPSMDTKSNLV 35
           IP+     H L H C+  ++ N+   CP   T +N+V
Sbjct: 21  IPRNLTCGHALCHKCITAMVNNSTVECPFCRTVTNIV 57


>U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 35 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 138 NLKLCRIIYSIPASALCY*IMLTHVPQWIQNPISFVFVQKTH 13
           N+ LC  IY+IP   LC  + + +  +WI +      VQ T+
Sbjct: 270 NIILC--IYTIPYGGLCLPLSVIYCTKWISDHRKIQIVQMTN 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,833,786
Number of Sequences: 27780
Number of extensions: 344653
Number of successful extensions: 703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)