Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0380
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.1  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   7.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.4  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   9.4  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
          opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 43 WILYPLRDMGKHYLIA 90
          W++YP  +   HYL+A
Sbjct: 37 WLVYPEPNPSLHYLLA 52


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 414 ILNLTTDVKNKSLTINS 364
           ILNL TD+ + S +I+S
Sbjct: 364 ILNLRTDISSSSSSISS 380


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 251 LLYILYKCGKFHSP 210
           L+Y + +CGKF  P
Sbjct: 72  LMYQIQQCGKFKEP 85


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 615 GNFNLLLISPLF 650
           G FNL+ ISPLF
Sbjct: 301 GIFNLVKISPLF 312


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 615 GNFNLLLISPLF 650
           G FNL+ ISPLF
Sbjct: 51  GIFNLVKISPLF 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,804
Number of Sequences: 438
Number of extensions: 4612
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)