Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0379
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26701| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_48339| Best HMM Match : BAG (HMM E-Value=5.9)                       31   0.84 
SB_39330| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_5356| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.84 
SB_4819| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.84 
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_26701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 21/40 (52%), Positives = 29/40 (72%)
 Frame = +1

Query: 76  GHHIGERGHVIEREQNVYTGDAEERQEFINLEEEEAADFD 195
           GHHIG+RG V+ER  N  T + E +Q+FIN++E +A  FD
Sbjct: 249 GHHIGDRGRVVERSLNRRTNEEERKQDFINMDENDAPSFD 288


>SB_48339| Best HMM Match : BAG (HMM E-Value=5.9)
          Length = 404

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 197 GTVGDSPSERHRCFFFCFIGYMQGRI*T*CRSWAPEKIRPNT 322
           G   D+ +    C  FC++G +Q  + +  R W   +IRP+T
Sbjct: 330 GLFCDADAVHVECLKFCYMGVLQRELQSVARRWNIHRIRPST 371


>SB_39330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 197 GTVGDSPSERHRCFFFCFIGYMQGRI*T*CRSWAPEKIRPNT 322
           G   D+ +    C  FC++G +Q  + +  R W   +IRP+T
Sbjct: 6   GLFCDADAVHVECLKFCYMGVLQRELQSVARRWNIHRIRPST 47


>SB_5356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 197 GTVGDSPSERHRCFFFCFIGYMQGRI*T*CRSWAPEKIRPNT 322
           G   D+ +    C  FC++G +Q  + +  R W   +IRP+T
Sbjct: 102 GLFCDADAVHVECLKFCYMGVLQRELQSVARRWNIHRIRPST 143


>SB_4819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 197 GTVGDSPSERHRCFFFCFIGYMQGRI*T*CRSWAPEKIRPNT 322
           G   D+ +    C  FC++G +Q  + +  R W   +IRP+T
Sbjct: 102 GLFCDADAVHVECLKFCYMGVLQRELQSVARRWNIHRIRPST 143


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 75  RPPHRRAGPRDRARTERVHG 134
           RPPHR  G R R+ +   HG
Sbjct: 98  RPPHRNVGERSRSCSPNTHG 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,647,711
Number of Sequences: 59808
Number of extensions: 350712
Number of successful extensions: 648
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)