Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0379
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023828-19|CAA19464.2|  293|Caenorhabditis elegans Hypothetical...    38   0.005
U23172-15|AAN63408.1|  374|Caenorhabditis elegans Hypothetical p...    29   4.0  
AL132948-23|CAC51049.1|  429|Caenorhabditis elegans Hypothetical...    28   5.3  

>AL023828-19|CAA19464.2|  293|Caenorhabditis elegans Hypothetical
           protein Y17G7B.17 protein.
          Length = 293

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = +1

Query: 76  GHHIGERGHVIEREQNVYTGDAEERQEFINLEEEEAADFDR 198
           GH IG+R H I+++++   G+  ++Q F NL+E  A  FDR
Sbjct: 149 GHSIGDRSHFIDKKRD-REGNVRKQQRFQNLDEASAEAFDR 188


>U23172-15|AAN63408.1|  374|Caenorhabditis elegans Hypothetical
           protein F25B5.7d protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 100 HVIEREQNVYTGDAEERQEFINLEEEEAADFDRYGGRLTLRATPMFFFLFYWLYA 264
           +V+E+++     D E R+    LE +    +  Y  ++      MFF LF+W  A
Sbjct: 316 YVVEQKRRAQL-DEELRESRRRLESDMELAYQDYQAQMLREGYLMFFLLFFWFRA 369


>AL132948-23|CAC51049.1|  429|Caenorhabditis elegans Hypothetical
           protein Y39B6A.31 protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = +1

Query: 70  VSGHHIGERGHVIEREQNVYTGDAEERQEFINLEEEEAADFDRYGGRLTLRATPMFFFLF 249
           V    + E    + +  + +  D  ER  +I L       FD Y   + L  T  FFF  
Sbjct: 311 VDSWKVSEENAQLPKRYSSFYVDIGERCSWIRLWITNIEKFDSYNNSMKLDETIDFFF-D 369

Query: 250 YWLYAGPDLN-LMPLLG 297
              Y GPD +   PL G
Sbjct: 370 QQFYVGPDSDKARPLAG 386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,919
Number of Sequences: 27780
Number of extensions: 287900
Number of successful extensions: 589
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)