Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0379
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12140.2 68416.m01511 emsy N terminus domain-containing prote... 32 0.30
At3g12140.1 68416.m01510 emsy N terminus domain-containing prote... 32 0.30
At2g45380.1 68415.m05645 expressed protein similar to gi2344899|... 29 3.7
At5g67330.1 68418.m08491 NRAMP metal ion transporter 4 (NRAMP4) ... 28 4.9
At3g52250.1 68416.m05742 myb family transcription factor contain... 28 4.9
At3g63470.1 68416.m07147 serine carboxypeptidase, putative simil... 28 6.5
At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative / ga... 27 8.6
At3g56540.1 68416.m06287 serine carboxypeptidase, putative simil... 27 8.6
At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus s... 27 8.6
>At3g12140.2 68416.m01511 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 327
Score = 32.3 bits (70), Expect = 0.30
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 114 RTERVHGGRGRAPGVHQP 167
R ++HGGRGR P +HQP
Sbjct: 216 RRGQIHGGRGRGPRIHQP 233
>At3g12140.1 68416.m01510 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 327
Score = 32.3 bits (70), Expect = 0.30
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 114 RTERVHGGRGRAPGVHQP 167
R ++HGGRGR P +HQP
Sbjct: 216 RRGQIHGGRGRGPRIHQP 233
>At2g45380.1 68415.m05645 expressed protein similar to
gi2344899|AC002388
Length = 491
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 85 IGERGHVIEREQNVYTGDAEERQEFINLEEEEAADFD 195
I ++GH + R+ N +G E Q NL+E+E + F+
Sbjct: 397 INDKGHSVTRKLNS-SGGVESTQTLHNLDEDELSGFE 432
>At5g67330.1 68418.m08491 NRAMP metal ion transporter 4 (NRAMP4)
identical to metal transporter Nramp4 [Arabidopsis
thaliana] gi|6468014|gb|AAF13279; member of the natural
resistance-associated macrophage protein (NRAMP) metal
transporter family, PMID:11500563
Length = 512
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 103 VIEREQNVYTGDAEERQEFINLEEEEAADFDRYGGRLTLRATPMFFFLFYWLYAGP 270
++ E+ Y + E+ + ++EEE AD+D G +P F + WL+ GP
Sbjct: 10 LLASEERAY--EETEKVLIVGIDEEEDADYDDDPGN-----SPKFSWKKLWLFTGP 58
>At3g52250.1 68416.m05742 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 1677
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +1
Query: 16 LKTP--IIDKGQLMISSRCFVSGHHIGERGHVIEREQNVYTG-DAEERQEFINLEEEEAA 186
LK P I+D+ + ++S F+S + + E +E+E+ + +EE++ F+NL
Sbjct: 849 LKMPAMILDEKERVMSR--FISSNGLIEDPCDVEKERTMINPWTSEEKEIFLNLLAMHGK 906
Query: 187 DFDRYGGRLTLRAT 228
DF + LT + T
Sbjct: 907 DFKKIASSLTQKTT 920
>At3g63470.1 68416.m07147 serine carboxypeptidase, putative similar
to SP|P52711 Serine carboxypeptidase II-3 precursor (EC
3.4.16.6) Hordeum vulgare; contains Pfam profile PF0450
serine carboxypeptidase
Length = 502
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 166 LEEEEAADFDRYGGRLTLRATPMFFFLFYWLYAGPDLNLMPLL 294
L + FD+YGG +T+ + F +Y++ A + PLL
Sbjct: 85 LPGQPPVSFDQYGGYVTVNESAGRSFFYYFVEASKSKDSSPLL 127
>At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative /
gamma-2 coat protein, putative / gamma-2 COP, putative
similar to SP|Q9UBF2 Coatomer gamma-2 subunit (Gamma-2
coat protein) (Gamma-2 COP) {Homo sapiens}; contains
Pfam profile: PF01602 Adaptin N terminal region
Length = 886
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 10 RYLKTPIIDKGQLMISSRCFVSGHHIGERG-HVIEREQNVYTGDAEERQEFI 162
RYLK I+DK ++SS VSG H+ + +++R N + R +
Sbjct: 144 RYLKQAIVDKNP-VVSSAALVSGLHLLKTNPEIVKRWSNEVQEGIQSRSALV 194
>At3g56540.1 68416.m06287 serine carboxypeptidase, putative similar
to SP|P52711 Serine carboxypeptidase II-3 precursor (EC
3.4.16.6) {Hordeum vulgare}; contains Pfam profile
PF0450 serine carboxypeptidase
Length = 264
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 136 DAEERQEFINLEEEEAADFDRYGGRLTLRATPMFFFLFYWLYAGPDLNLMPLL 294
+ +ER NL + + +F +YGG +T+ + +Y++ A N PL+
Sbjct: 73 EQKERDLIENLPGQPSVNFKQYGGYVTVNESAGRSLYYYFVEATNTKNSSPLV 125
>At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus
splice sites at intron 6
Length = 624
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 580 DLINLFPWRFKIIIDFSIFSNERNLISFFYVI*LRVTL 467
D I PWR +++ID F + +S V+ +RV L
Sbjct: 252 DTIFRLPWRCEVLIDTGFFVCVNSFLSLLTVMPIRVLL 289
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,189,875
Number of Sequences: 28952
Number of extensions: 254513
Number of successful extensions: 577
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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