Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0377
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660...    33   0.23 
01_03_0099 + 12547235-12547510                                         29   3.7  
07_01_0963 + 8085918-8086225,8086335-8086461,8087134-8087688           28   6.5  
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659...    28   6.5  
03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470...    27   8.5  

>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
            13266361-13266623,13267637-13267847,13268420-13268590,
            13268671-13268748,13269275-13269520,13269763-13271868,
            13272122-13273904,13274113-13274216,13274752-13275108,
            13275210-13275328,13276175-13276436,13276669-13276893,
            13277075-13277214,13278087-13278159,13278431-13278532,
            13278647-13279018,13279183-13279230,13279516-13279900,
            13280440-13280558
          Length = 2574

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -1

Query: 305  GPSTQGSSHLT*MLINIYSLSRLLRHPRDEMEWSYSYPGTTQVIIKIQE 159
            G  T G+S +  +L++IY L   L      M W Y +PG  Q   K QE
Sbjct: 2220 GAPTGGNSVIESLLVDIYPLKIYLTEAMYRMMWGYFFPGDEQHPQKRQE 2268


>01_03_0099 + 12547235-12547510
          Length = 91

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 132 SNTLRLAAGLLYFYYHLCGSRVRIGP 209
           +N   LAAGL+  ++H C  RVR+ P
Sbjct: 55  ANNSGLAAGLIRLHFHDCFVRVRLSP 80


>07_01_0963 + 8085918-8086225,8086335-8086461,8087134-8087688
          Length = 329

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 561 PVKQTTNIKNRWRA*NRSLCSRMRL 487
           P +    +KNRW A  RSL S+ RL
Sbjct: 176 PGRSENTVKNRWNATKRSLNSKRRL 200


>05_02_0100 +
           6594787-6594878,6595443-6595728,6595809-6595887,
           6595964-6596013,6597281-6597478,6597555-6597612,
           6598388-6598496,6599253-6599321,6599684-6599812,
           6599970-6600082,6600386-6600479,6602827-6602917,
           6604145-6604233,6604715-6604856,6605849-6606196,
           6606314-6607408
          Length = 1013

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -1

Query: 359 NTRLCVAIQE*DGGTELLGPS----TQGSSHLT*MLINIYSLSRL 237
           N  LCV + + DGG EL         QGSSH T  L  + S S +
Sbjct: 40  NGLLCVGLHQTDGGDELYATECLKMNQGSSHETNKLDAVMSASTM 84


>03_01_0643 -
           4708245-4708355,4708456-4708800,4709124-4709700,
           4709780-4710462,4710618-4710980,4712199-4712530,
           4712856-4713048,4713748-4713790,4713964-4714052,
           4714186-4714301,4714816-4714935,4715538-4715577
          Length = 1003

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -1

Query: 374 YITCENTRLCVAIQE*DGGTELL-GPSTQGSSHLT*MLINIYSLSRLLRHPRDEMEWSYS 198
           Y+TC N   C  ++E D   + +  PS  GS++    +     L +LL   +DE++ + S
Sbjct: 484 YVTCSNRLACSEVREFDFRPQYMDAPSPLGSTN---KIYLQKRLDKLLSVEQDEIQTTLS 540

Query: 197 YPGTTQVI 174
            P T ++I
Sbjct: 541 NP-TKEII 547


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,965,980
Number of Sequences: 37544
Number of extensions: 292704
Number of successful extensions: 455
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)