Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0377
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ512486-1|CAD54736.1|  559|Caenorhabditis elegans core alpha-6-...    29   1.9  
AF022968-8|AAN84870.1|  559|Caenorhabditis elegans Fucosyl trans...    29   1.9  

>AJ512486-1|CAD54736.1|  559|Caenorhabditis elegans core
           alpha-6-fucosyltransferase protein.
          Length = 559

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 281 HLT*MLINIYSLSRLLRHPRDEMEWSYSYPGTTQVIIKIQESS 153
           H+T   I  ++  R++   RD   W YS  G T V  K+ + S
Sbjct: 210 HVTYCAITAFATQRMMVLKRDGSSWKYSSHGWTSVFKKLSKCS 252


>AF022968-8|AAN84870.1|  559|Caenorhabditis elegans Fucosyl
           transferase protein 8 protein.
          Length = 559

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 281 HLT*MLINIYSLSRLLRHPRDEMEWSYSYPGTTQVIIKIQESS 153
           H+T   I  ++  R++   RD   W YS  G T V  K+ + S
Sbjct: 210 HVTYCAITAFATQRMMVLKRDGSSWKYSSHGWTSVFKKLSKCS 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,132,599
Number of Sequences: 27780
Number of extensions: 263061
Number of successful extensions: 503
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)