Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0377
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05260.1 68414.m00532 peroxidase 3 (PER3) (P3) / rare cold-in...    30   1.0  
At5g64120.1 68418.m08052 peroxidase, putative identical to perox...    29   3.1  
At5g39580.1 68418.m04794 peroxidase, putative identical to perox...    28   4.1  
At5g35960.1 68418.m04330 protein kinase, putative contains prote...    28   4.1  
At4g10670.1 68417.m01743 transcription elongation factor-related...    28   5.4  
At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL...    27   7.1  
At5g18910.1 68418.m02246 protein kinase family protein contains ...    27   7.1  
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    27   9.4  

>At1g05260.1 68414.m00532 peroxidase 3 (PER3) (P3) / rare
           cold-inducible protein (RCI3A) (PRC) identical to
           SP|O23044 Peroxidase 3 precursor (EC 1.11.1.7) (Atperox
           P3) (Rare cold inducible protein) (RCI3A) (ATPRC)
           {Arabidopsis thalliana}
          Length = 326

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +3

Query: 12  FI*VRSVRPLSK*LKITSFRSNRPNEEFEIVHINMKNTHFSNTLRLAAGLLYFYYHLC 185
           F  V  V P+   L++  + ++ PN E +IV   + N H SN   LAA L+  ++H C
Sbjct: 13  FFLVGIVGPIQAQLQMNFYANSCPNAE-KIVQDFVSN-HVSNAPSLAAALIRMHFHDC 68


>At5g64120.1 68418.m08052 peroxidase, putative identical to
           peroxidase [Arabidopsis thaliana]
           gi|1483222|emb|CAA67551
          Length = 328

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +3

Query: 96  EIVHINMKNTHFSNTLRLAAGLLYFYYHLCGSRVRIGPLHLIPWMS*EATKGINVN 263
           E +  N  N  FS+  R+A G+L  ++H C  +   G + LI   + E T G N+N
Sbjct: 48  ETIVRNAVNAGFSSDPRIAPGILRMHFHDCFVQGCDGSI-LISGANTERTAGPNLN 102


>At5g39580.1 68418.m04794 peroxidase, putative identical to
           peroxidase ATP24a [Arabidopsis thaliana]
           gi|1890313|emb|CAA72484
          Length = 319

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = +3

Query: 54  KITSFRSNRPNEEFEIVHINMKNTHFSNTLRLAAGLLYFYYHLCGSRVRIGPLHLIPWMS 233
           +I  + +  PN E  IV   + + HF +  ++A GLL  + H C  +   G + L+   +
Sbjct: 26  RIGFYSTTCPNAE-TIVRTTVAS-HFGSDPKVAPGLLRMHNHDCFVQGCDGSV-LLSGPN 82

Query: 234 *EATKGINVNEH 269
            E T G NVN H
Sbjct: 83  SERTAGANVNLH 94


>At5g35960.1 68418.m04330 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 429

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 314 ELLGPSTQGSSHLT*MLINIYSLSRLLRHPRDEMEWSYSY 195
           +LLG   +G  HL   L    SL+ +L   +++M+WS  Y
Sbjct: 193 KLLGYGVEGGMHLVLELSPHGSLASMLYSSKEKMKWSIRY 232


>At4g10670.1 68417.m01743 transcription elongation factor-related
           low similarity to chromatin-specific transcription
           elongation factor FACT 140 kDa subunit [Homo sapiens]
           GI:5499741
          Length = 470

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 57  ITSFRSNRPNEEFEIVHINMKNTHFSNTLRLAAGLLYFYYH 179
           +  FR +  NE  +++  N+K+  F    +    LL+F+ H
Sbjct: 143 VNGFRYSTTNERVDVLFANIKHAFFQPAEKEMTTLLHFHLH 183


>At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL3)
           identical to IAA-amino acid hydrolase homolog ILL3
           [Arabidopsis thaliana] gi|3420801|gb|AAC31939
          Length = 428

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 269 MLINIYSLSRLLRHPRDEMEWSYSYP-GTTQVIIKI 165
           +L  ++  S L+R   DE+  SYSYP   T ++ +I
Sbjct: 54  LLFELHKTSALIRRELDELGVSYSYPVAKTGIVAQI 89


>At5g18910.1 68418.m02246 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 511

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -1

Query: 314 ELLGPSTQGSSHLT*MLINIYSLSRLLRHPRDEMEWSYSYP---GTTQVIIKIQESSRK 147
           +L+G   +G  HL   L    SL+ LL   ++++ WS  Y    GT + +  + E  ++
Sbjct: 251 KLIGYCVEGGMHLVLELSPNGSLASLLYEAKEKLNWSMRYKVAMGTAEGLYYLHEGCQR 309


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 66  FRSNRPNEEFEIVHINMKNTHFSNTLRLAAGLLYFYYH 179
           + + RP+E  +++  N+K+  F    +    LL+F+ H
Sbjct: 708 YSTTRPDERVDVLFANIKHAFFQPAEKEMITLLHFHLH 745


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,169,144
Number of Sequences: 28952
Number of extensions: 238945
Number of successful extensions: 436
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)