Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0376
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    22   4.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   4.5  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   6.0  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   6.0  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   6.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   6.0  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    21   7.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.9  

>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 189 YLATWLQYRAHGKKHNDAQSHQRP 260
           YL  W+  R   + H D    +RP
Sbjct: 15  YLNIWVPQRLRIRHHGDKPPQERP 38


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 326 NTKPTLPLMCGNSFSRAGLL 267
           N KP +  +CG S++R   L
Sbjct: 246 NQKPNVCRICGKSYARPSTL 265


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 296 GNSFSRAGLLSRWSLMALRIIVFFPMSTILEPRSEIRICCILLRAHV 156
           G  + R+ L  R+ +     +  F +ST L PRS I      +R+H+
Sbjct: 169 GYQYLRSTLSDRYKVF----VDLFNLSTFLIPRSYIPPLSTSMRSHL 211


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 296 GNSFSRAGLLSRWSLMALRIIVFFPMSTILEPRSEIRICCILLRAHV 156
           G  + R+ L  R+ +     +  F +ST L PRS I      +R+H+
Sbjct: 329 GYQYLRSTLSDRYKVF----VDLFNLSTFLIPRSYIPPLSTSMRSHL 371


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 296 GNSFSRAGLLSRWSLMALRIIVFFPMSTILEPRSEIRICCILLRAHV 156
           G  + R+ L  R+ +     +  F +ST L PRS I      +R+H+
Sbjct: 329 GYQYLRSTLSDRYKVF----VDLFNLSTFLIPRSYIPPLSTSMRSHL 371


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 414 QWGNGTRTSW 385
           Q+GNG  TSW
Sbjct: 274 QFGNGLETSW 283


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 219 HGKKHNDAQSHQRPPGQQSSPRETVATHQGQRWLRVH 329
           H K H    + +RP   +   R+ V     +R LRVH
Sbjct: 24  HLKTHMRLHTGERPYRCEHCDRQFVQVANLRRHLRVH 60


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 219 HGKKHNDAQSHQRPPGQQSSPRETVATHQGQRWLRVH 329
           H K H    + +RP   +   R+ V     +R LRVH
Sbjct: 177 HLKTHMRLHTGERPYRCEHCDRQFVQVANLRRHLRVH 213


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,031
Number of Sequences: 336
Number of extensions: 3726
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)