Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0376
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   180   2e-46
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    48   8e-07
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    30   0.29 
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    29   0.52 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   0.90 
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   1.6  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    27   2.7  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   3.6  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   3.6  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    26   3.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.8  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    25   6.3  
SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc...    25   6.3  
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    25   6.3  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    25   8.4  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   8.4  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  180 bits (437), Expect = 2e-46
 Identities = 84/141 (59%), Positives = 111/141 (78%)
 Frame = +1

Query: 175 MQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVR 354
           M  +R  LRG++ ++MGKNTM+R+A++  +++ P LE+LLP ++GNVGFVFT  DL EVR
Sbjct: 38  MHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVR 97

Query: 355 DKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVH 534
           + ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH
Sbjct: 98  ETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVH 157

Query: 535 MLKPGDKVGASEATLLNMLNM 597
           ++    KVG SEATLLNMLN+
Sbjct: 158 LVSKDAKVGPSEATLLNMLNI 178


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 48.4 bits (110), Expect = 8e-07
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 21/172 (12%)
 Frame = +1

Query: 145 WV-PITWARNS-MQQIRISLRGSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHI 303
           W+  +T  RN+ +++IR   +GS I  MGK  +M KA+     ++H +N   L KLL   
Sbjct: 41  WIFDVTNMRNTYLKRIRDDWKGSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL--- 96

Query: 304 KGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIPA----HNTGLGPEKTSF 468
            G VG +FT     EV     E+ VQ   AR GA+AP + VIPA       G  P +   
Sbjct: 97  HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDI 155

Query: 469 F---------QALSIPTKISKGTIEIINDVHMLKPGDKVGASEATLLNMLNM 597
                     + L +PT +  G + ++ D  +   G ++ + +  LL +  +
Sbjct: 156 LLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQTRLLKLFGI 207


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 215 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 322
           CS EKT  C++  K+  T+ +PS  CC   ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 281 RAGLLSRWSLMALRIIVFFPMSTILEPRSEIRI 183
           +A     W LM + +++F  +  ILEPR   R+
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPRKRKRL 194


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 521 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 396
           +IS  P + L+GI  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 359 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 234
           L +T  +S    + PTLP +   + S +G+LSR + + ++ I
Sbjct: 35  LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 528 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 406
           IVD  NS   +  R  + L ++G+L+  +GV GG +  ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -3

Query: 455 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 285
           +G  PV    +  + G++ P  AGAW L  N L    T   +   +NT P  PL  G  F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194

Query: 284 SRAGL 270
           S   L
Sbjct: 195 SEEEL 199


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 374  LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 213
            LFSN + R +    R+ T     L+ GN++     +  W+L+A   I  F  +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 18/58 (31%), Positives = 22/58 (37%)
 Frame = -1

Query: 223 P*ARYWSHVARYGSAAYCCEPTLSAPTMKHFGYSYQELDDLNEVVRLPSSLVLPTHPG 50
           P A+Y  H+ +  S  Y    TLS      F         L  VV+ P SL    H G
Sbjct: 28  PSAQYRKHLTKSQSRTYAPLQTLSEDQFTSFKNLQGNNSPLGNVVKNPVSLKTGNHTG 85


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = +2

Query: 251 SKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP 430
           S T  T+   +   C TS + L + +P  ++  + TNC  T + +     P+     +  
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTIS 576

Query: 431 PTTPAS 448
            +TP +
Sbjct: 577 SSTPVT 582


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 528 IVDDFNSTL*NLGRDRKSL 472
           +VD  NSTL N+GR R S+
Sbjct: 98  VVDSVNSTLNNIGRGRLSV 116


>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 187 GSAAYCCEPTLSAPTMKHFGYSYQEL 110
           GSA     P++  P +  FGY Y E+
Sbjct: 40  GSAVRLPGPSIDKPNIYQFGYPYDEI 65


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +1

Query: 139 SSWVPITW-ARNSMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN-NPALEKL-LPHIKG 309
           + W+ +    + ++   R+ L     + +G  T    AIK  +DN + +L+KL L +  G
Sbjct: 126 TDWIQVFQDCKRNLHMYRVDLMSGKSITIGVQTKNVYAIKSLMDNLSESLDKLELANALG 185

Query: 310 NVGFVFTRGDLVE 348
             G +  R D++E
Sbjct: 186 -PGEILRRKDMLE 197


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +3

Query: 156 NVGSQQYAADPYLATWLQYRAHGKKHNDAQSHQ-----RPPGQQSS 278
           ++G++   A PY   +L+  A  KK ND + HQ      PP  +SS
Sbjct: 57  SLGNRILHATPYEENFLRAIAPVKKLNDTELHQTLYIEHPPNLESS 102


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +2

Query: 248 PSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSF 427
           PS + W T+  SR     SR   +S SP+  S +        + K  L L+ +   +S++
Sbjct: 187 PSNSYWKTVIGSREMFEDSRKKTSSPSPSFASSKDAGTIPAIQKKKSL-LIEMMETESTY 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,711
Number of Sequences: 5004
Number of extensions: 59766
Number of successful extensions: 200
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)