Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0376
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 171 3e-43
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 171 4e-43
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 171 4e-43
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 35 0.057
06_01_0080 + 644021-645463 33 0.23
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.53
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 29 2.1
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 29 3.7
03_04_0243 + 19298293-19299117 28 4.9
11_01_0355 + 2679561-2680985,2681183-2682295 28 6.5
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968... 28 6.5
01_06_0845 - 32389889-32389909,32390074-32390241,32390334-323904... 28 6.5
11_08_0037 + 27859867-27860382,27860471-27861440,27861647-278619... 27 8.6
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 27 8.6
04_04_0849 - 28689098-28689188,28689373-28689503,28689850-286899... 27 8.6
03_05_0907 + 28678909-28679253 27 8.6
02_01_0152 - 1070249-1070296,1070443-1070515,1070601-1070671,107... 27 8.6
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 171 bits (417), Expect = 3e-43
Identities = 83/145 (57%), Positives = 109/145 (75%), Gaps = 2/145 (1%)
Frame = +1
Query: 169 NSMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDL 342
N +Q+IR LRG SIVLMGKNT++R+ IK H DN N +L+P + GNVG +FT+GDL
Sbjct: 39 NQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDL 98
Query: 343 VEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 522
EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII
Sbjct: 99 KEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEII 158
Query: 523 NDVHMLKPGDKVGASEATLLNMLNM 597
V ++K GDKVG+SE+ LL L +
Sbjct: 159 TPVELIKKGDKVGSSESALLAKLGI 183
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 171 bits (416), Expect = 4e-43
Identities = 83/145 (57%), Positives = 109/145 (75%), Gaps = 2/145 (1%)
Frame = +1
Query: 169 NSMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDL 342
N +Q+IR LRG SIVLMGKNT++R+ IK H DN N +L+P + GNVG +FT+GDL
Sbjct: 39 NQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDL 98
Query: 343 VEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 522
EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII
Sbjct: 99 KEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEII 158
Query: 523 NDVHMLKPGDKVGASEATLLNMLNM 597
V ++K GDKVG+SE+ LL L +
Sbjct: 159 TPVELIKKGDKVGSSESALLAKLGI 183
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 171 bits (416), Expect = 4e-43
Identities = 83/145 (57%), Positives = 109/145 (75%), Gaps = 2/145 (1%)
Frame = +1
Query: 169 NSMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDL 342
N +Q+IR LRG SIVLMGKNT++R+ IK H DN N +L+P + GNVG +FT+GDL
Sbjct: 39 NQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDL 98
Query: 343 VEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 522
EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII
Sbjct: 99 KEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEII 158
Query: 523 NDVHMLKPGDKVGASEATLLNMLNM 597
V ++K GDKVG+SE+ LL L +
Sbjct: 159 TPVELIKKGDKVGSSESALLAKLGI 183
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 34.7 bits (76), Expect = 0.057
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Frame = +1
Query: 190 ISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDK 360
I L + L+ + ++ L N AL+KL LPH ++GN+GF+ + + ++ D
Sbjct: 372 IGLLQKLVYLLLSANQLSGSVPRTLGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDL 431
Query: 361 LLENKVQAPARPGAIAPLSV----VIPAHN--TGLGPEKTSFFQALSI 486
+L++ A P + LS I HN G PEK S +L +
Sbjct: 432 ILDHNSFVGALPDHLGNLSARLISFIADHNKLAGSLPEKMSNLSSLEL 479
>06_01_0080 + 644021-645463
Length = 480
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 528 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGND 421
I+D N N R K++EERGLL+ GV GG +
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEE 135
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.5 bits (68), Expect = 0.53
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +1
Query: 274 PALEK-LLPHIKGN---VGFVFTRGDLVEV--RDKLLENKVQAPARPGAIAPLSVVIPA 432
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -3
Query: 593 FNMFRRVASEAPTLSPGFNMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTD 414
F + V S +P+ +CT L I+ L+G+ +A+ V SGP P G T D
Sbjct: 314 FGTYPFVTSSSPSAG---GICTGLGIAPRSIGDLIGVVKAYTTRVGSGPFPTELLGKTGD 370
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 330 GEHEANVALDVWQQFLEGWIVVQVVFDGFAHH 235
G HEA+ L W+ + GW + F GFA H
Sbjct: 189 GNHEASNYL--WELYYGGWAAPNIYFLGFAGH 218
>03_04_0243 + 19298293-19299117
Length = 274
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -3
Query: 425 MTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLMCGNSFS 282
+ TD+ + APG A A + S SRTS +P ++ PT P +S +
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSPRRARSSLT 217
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 263 WTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKL 385
W ++ HTS TL+ SP+ +S+ T+C+ + +
Sbjct: 480 WNPMRNGSAPHHTSELTLSFSSPSPSSISGYTSCYNNNNMM 520
>07_03_0196 +
14995224-14995489,14995859-14995877,14996703-14996839,
14998365-14998457,15001597-15001932,15003035-15003503
Length = 439
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -2
Query: 402 GTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQFLEGW 274
G +WS F +LN +S H+ V L+ W + W
Sbjct: 197 GNAENWSSQGDKDDFYNELNTISEARHKNLVKLEGWCCHINAW 239
>01_06_0845 -
32389889-32389909,32390074-32390241,32390334-32390453,
32390982-32391068,32391149-32391217,32391448-32391510,
32391648-32391989,32392245-32392337,32392457-32392660,
32392910-32393154,32393249-32393414
Length = 525
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +3
Query: 153 DNVGS---QQYAADPYLATWLQYRAHGKKHNDAQSHQRPPGQQSSPRETVATHQGQRWLR 323
+N+GS ++ P+LA L++ + KKH + + + +Q + ++T A H Q R
Sbjct: 400 NNIGSPCQDDSSSQPHLAHDLRWEMNKKKHRNLEKFAKTTEKQDTQKKT-AHHMAQN--R 456
Query: 324 VH 329
VH
Sbjct: 457 VH 458
>11_08_0037 +
27859867-27860382,27860471-27861440,27861647-27861991,
27862074-27862693
Length = 816
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 286 KLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP 387
KLLP VGFV RG V+ +K+++ P
Sbjct: 464 KLLPLDANKVGFVNVRGPHVQAPEKIMDGDYTGP 497
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 297 WQQFLEGWIVVQVVFDGFAHHCV 229
W FLEGW V F+G A H V
Sbjct: 356 WSPFLEGWNSPAVQFEGPAVHVV 378
>04_04_0849 -
28689098-28689188,28689373-28689503,28689850-28689956,
28692318-28692396,28692583-28692678,28692777-28693049,
28693139-28693285,28693381-28693723,28693784-28693995
Length = 492
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +3
Query: 114 SWYEYPKCFIVGADNVGSQQYAADPYL 194
SWY I+G DNVG QQ A YL
Sbjct: 113 SWYPDSFVEILGKDNVGEQQGAMFRYL 139
>03_05_0907 + 28678909-28679253
Length = 114
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 446 RPVLWAGMTTDNGAMAPGRAGA 381
RP+L NGA APG AGA
Sbjct: 53 RPLLHGSAAAANGASAPGNAGA 74
>02_01_0152 -
1070249-1070296,1070443-1070515,1070601-1070671,
1070768-1070874,1071836-1072007
Length = 156
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 226 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLE 369
K T RK HL N AL K+ V +G L+E+ D+L++
Sbjct: 86 KVTGKRKRNAQHLQENSALCKVCTSSNSFVVRCCVKGSLLEINDRLIK 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,188,716
Number of Sequences: 37544
Number of extensions: 448742
Number of successful extensions: 1271
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -