Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0376
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 197 6e-51
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 34 0.10
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 2.9
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 5.0
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 28 6.6
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10) 27 8.7
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69) 27 8.7
SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5) 27 8.7
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 27 8.7
SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6) 27 8.7
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 197 bits (480), Expect = 6e-51
Identities = 92/130 (70%), Positives = 110/130 (84%)
Frame = +1
Query: 175 MQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVR 354
MQ IR SLRG VLMGKNTM+RKAI+ HL+NNP LEKLLPHIKGN+GFVFT+ DL +VR
Sbjct: 22 MQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTKEDLADVR 81
Query: 355 DKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVH 534
++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI++GTIEIINDVH
Sbjct: 82 KIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIEIINDVH 141
Query: 535 MLKPGDKVGA 564
++K +K+ A
Sbjct: 142 LIKKDEKLKA 151
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 123 EYPKCFIVGADNVGSQQ 173
EYPK F+VG DNVGS+Q
Sbjct: 5 EYPKLFLVGVDNVGSKQ 21
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +1
Query: 226 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 342
K T++RK +K HLDN P L K LP + G + + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = -2
Query: 528 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 406
I+D NS + R K+LEERGLL+ +GV GG + ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 367 ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHML 540
E ++ +PA +P S+ TGL P S Q LS+ T + ++ D+
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128
Query: 541 KPGDK 555
PG K
Sbjct: 2129 TPGKK 2133
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 434 WAGMTTDNGAMAPGRAGAWTLFSNSL 357
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 371 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 261
FS+S + T KP +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 148 VPITWARNSMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA-LEKLLPHIKGNVGFV 324
V +TW R +QQ G+S++ + + A ++ L N+ ++ +L + +
Sbjct: 856 VEMTWVREHLQQASSGDLGTSLISVQRLQKRHLAFENELTNHQTRIDTVLSSGQDLIDSC 915
Query: 325 FTRGDLVEVRDKLLEN 372
++ D VE R + L+N
Sbjct: 916 YSATDKVEERCEELQN 931
>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1925
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -3
Query: 560 PTLSPGFNMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLW 432
P +S N+ T +++ P + V + + +F GP VLW
Sbjct: 1604 PAVSSTNNVITKRLLNKFPHPVTVAFVQVFSTALFMGPTLVLW 1646
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 560 PTLSPGFNMCTSLMISIVPFEILVGIERAWKKEVFSGPR 444
P P F C +L+ ++ ++ + RAW+KEV S R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878
>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
Length = 543
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = -3
Query: 569 SEAPTLSPGFNMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMT 420
S P L P S I+P EILVG+ER +K V G L MT
Sbjct: 258 SNGPPLEPKVWDLESAEWPIIPGEILVGLER--RKPVLKGLLITLCENMT 305
>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
Length = 430
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 269 TIQPSRNCCHTSRATLAS-CSPAETSLRSVTNCWRTKSKLQLVLVPL 406
+I+P+R C HTS L++ S+R C T SK+ V L
Sbjct: 71 SIRPARCCQHTSSKVLSTYVQQGVVSIRPARCCQHTSSKVLSTYVQL 117
>SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)
Length = 152
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 181 QIRISLRGSSIVLMGKNTMMRKAIKDHLDNNP 276
Q+R L S +L+G NT+++ A+ D L P
Sbjct: 23 QVRPGLTALSTILLGANTVIQAALPDILAKTP 54
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +2
Query: 269 TIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP----PT 436
T+ P + CC+ +A A+ +P + + T T++ + P P C P P+
Sbjct: 624 TLCPQK-CCNKGKAAAAAAAPTKPPTAAPTTAAATQAAPAAMTCPQPACAPQSPMSCMPS 682
Query: 437 TPA 445
PA
Sbjct: 683 CPA 685
>SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)
Length = 342
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 257 TTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTN 361
TTWT ++ S R LA CS TS R+ TN
Sbjct: 67 TTWTALRGSTTSYRRRRTFLAPCS-INTSQRTSTN 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,589,022
Number of Sequences: 59808
Number of extensions: 504251
Number of successful extensions: 1433
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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