Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0376
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 206 7e-54
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical pr... 29 2.5
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 28 4.4
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 28 5.8
U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical pr... 28 5.8
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 28 5.8
AC024849-3|AAK68547.1| 327|Caenorhabditis elegans Hypothetical ... 28 5.8
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 206 bits (504), Expect = 7e-54
Identities = 96/141 (68%), Positives = 118/141 (83%)
Frame = +1
Query: 175 MQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVR 354
MQ+IR ++RG + +LMGKNTM+RKA++ HL NP+LEKLLPHI NVGFVFT+ DL E+R
Sbjct: 40 MQEIRQAMRGHAEILMGKNTMIRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIR 99
Query: 355 DKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVH 534
KLLEN+ APA+ GAIAP V +P NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH
Sbjct: 100 SKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVH 159
Query: 535 MLKPGDKVGASEATLLNMLNM 597
++K GDKVGASE+ LLNML +
Sbjct: 160 LIKEGDKVGASESALLNMLGV 180
Score = 39.1 bits (87), Expect = 0.002
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLVRVPK 133
M RED++TWK+NYF K+++L PK
Sbjct: 1 MVREDRSTWKANYFTKLVELFEEYPK 26
Score = 35.1 bits (77), Expect = 0.038
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 123 EYPKCFIVGADNVGSQQ 173
EYPKC +VG DNVGS+Q
Sbjct: 23 EYPKCLLVGVDNVGSKQ 39
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 46.4 bits (105), Expect = 2e-05
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Frame = +1
Query: 184 IRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA--LEKLLPHIKGNVGFVFTRGDLVEVRD 357
IR + +S GKN ++ A+ + A L K +KG G +FT EV
Sbjct: 56 IRQKYKENSRFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEA 115
Query: 358 KLLENKVQAPARPGAIAPLSVVIP-AHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVH 534
+ E + AR G +A +VV+P + + L +PTK+ KG I +
Sbjct: 116 EFSEASEEDYARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITLYQQFE 175
Query: 535 MLKPGDKVGASEATLL 582
+ K G+ + +A +L
Sbjct: 176 VCKEGEPLTVEQAKIL 191
>Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical
protein T06E6.10 protein.
Length = 249
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/56 (23%), Positives = 21/56 (37%)
Frame = +2
Query: 206 PVSCSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRT 373
P C+ + C T ++P+ C H + T CSP + C+ T
Sbjct: 109 PAGCAMVRPSGCMDSPTMTGCELKPT--CIHVNACTTTKCSPGKKCALHTVQCFTT 162
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 422 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 312
TT P AG WT+ +N ++R TR P +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +1
Query: 127 TQNVSSWVPITWARNSMQQIRISL---RGSSIVLMGKNTMMRKAIKD 258
TQN + + +AR ++++R +L RG L G+N ++ K I+D
Sbjct: 312 TQNSRNCLEQNYAREEVKRLRTTLGDMRGKMADLEGRNLLLEKQIED 358
>U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical
protein C33G8.12 protein.
Length = 358
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 11 LVLKFHRSPYATLSRMGREDKATWKSNYFVK 103
L+ K S ++ +SR+ +EDK + SN+++K
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK 186
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +1
Query: 127 TQNVSSWVPITWARNSMQQIRISL---RGSSIVLMGKNTMMRKAIKD 258
TQN + + +AR ++++R +L RG L G+N ++ K I+D
Sbjct: 295 TQNSRNCLEQNYAREEVKRLRTTLGDMRGKMADLEGRNLLLEKQIED 341
>AC024849-3|AAK68547.1| 327|Caenorhabditis elegans Hypothetical
protein Y67D8B.2 protein.
Length = 327
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 361 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 510
+L +Q A A+ L+ +P TGL P + FQAL P I+ T
Sbjct: 42 VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,042
Number of Sequences: 27780
Number of extensions: 352631
Number of successful extensions: 1080
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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