Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0376
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 167 6e-42
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 167 6e-42
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 165 1e-41
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 39 0.003
At3g50610.1 68416.m05534 hypothetical protein 29 1.8
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 1.8
At5g39130.1 68418.m04734 germin-like protein, putative identical... 29 3.1
At1g58220.1 68414.m06612 myb family transcription factor contain... 29 3.1
At5g39190.1 68418.m04746 germin-like protein (GER2) identical to... 28 4.1
At5g39160.1 68418.m04738 germin-like protein (GLP2a) (GLP5a) ide... 28 4.1
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 5.4
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 5.4
At1g76910.1 68414.m08953 hypothetical protein 28 5.4
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 28 5.4
At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family... 27 9.5
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr... 27 9.5
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 167 bits (405), Expect = 6e-42
Identities = 80/143 (55%), Positives = 108/143 (75%), Gaps = 2/143 (1%)
Frame = +1
Query: 175 MQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVE 348
+Q IR LRG S+VLMGKNTMM+++++ H +N N A+ LLP ++GNVG +FT+GDL E
Sbjct: 40 LQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKE 99
Query: 349 VRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIND 528
V +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII
Sbjct: 100 VSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP 159
Query: 529 VHMLKPGDKVGASEATLLNMLNM 597
V ++K GDKVG+SEA LL L +
Sbjct: 160 VELIKQGDKVGSSEAALLAKLGI 182
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 167 bits (405), Expect = 6e-42
Identities = 80/143 (55%), Positives = 108/143 (75%), Gaps = 2/143 (1%)
Frame = +1
Query: 175 MQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVE 348
+Q IR LRG S+VLMGKNTMM+++++ H +N N A+ LLP ++GNVG +FT+GDL E
Sbjct: 40 LQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKE 99
Query: 349 VRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIND 528
V +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII
Sbjct: 100 VSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP 159
Query: 529 VHMLKPGDKVGASEATLLNMLNM 597
V ++K GDKVG+SEA LL L +
Sbjct: 160 VELIKQGDKVGSSEAALLAKLGI 182
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 165 bits (402), Expect = 1e-41
Identities = 80/143 (55%), Positives = 106/143 (74%), Gaps = 2/143 (1%)
Frame = +1
Query: 175 MQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVE 348
+Q IR LRG S+VLMGKNTMM+++++ H D N A LLP ++GNVG +FT+GDL E
Sbjct: 41 LQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKE 100
Query: 349 VRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIND 528
V +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII
Sbjct: 101 VSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP 160
Query: 529 VHMLKPGDKVGASEATLLNMLNM 597
V ++K GDKVG+SEA LL L +
Sbjct: 161 VELIKKGDKVGSSEAALLAKLGI 183
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 38.7 bits (86), Expect = 0.003
Identities = 30/143 (20%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Frame = +1
Query: 178 QQIRISLRGSSIVLMGKNTMMRKAIKDHLDNN--PALEKLLPHIKGNVGFVFTRGDLVEV 351
++ R R + +G N +M+ A+ ++ + K+ ++G+ G + T EV
Sbjct: 54 KEFRQQFRHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEV 113
Query: 352 RDKLLENKVQAPARPGAIAPLSVVIPAHNTG-LGPEKTSFFQALSIPTKISKGTIEIIND 528
+ +R G+IA +V + E + L +P +++KGT+E++ D
Sbjct: 114 ESLFNAYEDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVAD 173
Query: 529 VHMLKPGDKVGASEATLLNMLNM 597
+ + G ++ A +L +L M
Sbjct: 174 FVVCEEGKQLSPKSAHILRLLRM 196
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 256 DHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPA 432
D + +P + H KGNV + D KLL+ VQ + G+ + P
Sbjct: 31 DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90
Query: 433 HNTGLGPEK 459
H+ G+G +K
Sbjct: 91 HSPGVGHKK 99
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 268 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 366
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At5g39130.1 68418.m04734 germin-like protein, putative identical to
germin-like protein subfamily 1 member 16 (SP|Q9FIC8)
Length = 222
Score = 28.7 bits (61), Expect = 3.1
Identities = 33/111 (29%), Positives = 51/111 (45%)
Frame = +1
Query: 118 GTSTQNVSSWVPITWARNSMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLP 297
G +T +S V I +A + RGS I+++ + T+ + + DNN K+L
Sbjct: 88 GLNTMGISL-VRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVL- 145
Query: 298 HIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 450
H G+V FVF G + +L K+ A A G + + VI NT G
Sbjct: 146 H-PGDV-FVFPIG---MIHFQLNIGKIPAIAFAGLSSQNAGVITIANTVFG 191
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 28.7 bits (61), Expect = 3.1
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Frame = -3
Query: 581 RRVASEAPTLSPGFNMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAM 402
RR + + G + M + + VG R K++ G P+L +G T GA
Sbjct: 244 RRTDTSNTSTQTGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQ 300
Query: 401 APGRAGAWTLFSN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLL 267
A G + TL +LSR +T P ++ + GNS SRA L+
Sbjct: 301 ANGASSGSTLQGQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLM 353
>At5g39190.1 68418.m04746 germin-like protein (GER2) identical to
germin-like protein subfamily 1 member 20 [SP|P92996]
Length = 222
Score = 28.3 bits (60), Expect = 4.1
Identities = 32/111 (28%), Positives = 51/111 (45%)
Frame = +1
Query: 118 GTSTQNVSSWVPITWARNSMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLP 297
G +T +S V I +A + RGS I+++ + T+ + + DNN K+L
Sbjct: 88 GLNTMGISL-VRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVL- 145
Query: 298 HIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 450
H G+V FVF G + ++ K+ A A G + + VI NT G
Sbjct: 146 H-PGDV-FVFPIG---MIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFG 191
>At5g39160.1 68418.m04738 germin-like protein (GLP2a) (GLP5a)
identical to germin-like protein subfamily 1 member 18
SP|P92999 [PMID:9869400]
Length = 222
Score = 28.3 bits (60), Expect = 4.1
Identities = 32/111 (28%), Positives = 51/111 (45%)
Frame = +1
Query: 118 GTSTQNVSSWVPITWARNSMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLP 297
G +T +S V I +A + RGS I+++ + T+ + + DNN K+L
Sbjct: 88 GLNTMGISL-VRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVL- 145
Query: 298 HIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 450
H G+V FVF G + ++ K+ A A G + + VI NT G
Sbjct: 146 H-PGDV-FVFPIG---MIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFG 191
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -3
Query: 419 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 306
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 278 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 382
P R HT+R SC ETS +VT+ K++
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At1g76910.1 68414.m08953 hypothetical protein
Length = 139
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 67 GQGYLEV*LLR*DHPTLGTSTQNVSSWVPITWARNSMQQIRISLRGSSIVLMGK--NTMM 240
G+G E+ + + L T+ + S++ ++W+RN ++R+ GS V+ + T M
Sbjct: 49 GRGGSELGMSASGNRWLATAKNSCGSFLKLSWSRNLNPEVRVYSSGSQQVVSFRLVMTKM 108
Query: 241 RKAIKDHLDNNPALEKLLPH 300
+ + ++ E+L H
Sbjct: 109 QNSSTFFVEKQQGRERLKTH 128
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -2
Query: 435 VGGNDD*QWGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 289
+G + + +G+ T + +LQ + +S+GE E +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377
>At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 418
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 330 GEHEANVALDVWQQFLEGWIVVQVVFDGFA 241
G HEA+ L W+ + GW + F GFA
Sbjct: 83 GNHEASNYL--WELYYGGWAATNIYFLGFA 110
>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 872
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 262 LDNNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLLENK 375
+ N P ++++ PHI VG + T+GD+ + D L +
Sbjct: 761 ITNQPVIQQVREKPHIAEWVGLMLTKGDIKSIMDPKLNGE 800
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,921,068
Number of Sequences: 28952
Number of extensions: 338281
Number of successful extensions: 1044
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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