Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0375
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    27   3.4  
SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    26   6.0  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   7.9  

>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +1

Query: 391 SSKIQGSNPEP---ICLQVFDKLAEVCAKFSE-LAPTSEGI 501
           S  +QG +  P   + +Q+FD++ E+CA  +E + P  +GI
Sbjct: 462 SLSVQGVDELPFKMLFMQLFDRILEICAAMTEDVRPPYKGI 502


>SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +1

Query: 304 GGPGCVHMK--YVSPD-EGFMVKISYGKNLIHSSKIQG 408
           GGPGC  MK  YV P+  G  + +   K +I  S+  G
Sbjct: 79  GGPGCCEMKRLYVRPESRGLKLGVLLVKEIIQYSEKLG 116


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = +1

Query: 361 KISYGKNLIHSSKIQGSNPEPICLQVFDKLAEVCAKFSELAPTSEGIRGCLELEPRI--F 534
           K+  G +  H+S  +G      CL +FD      A F +   T++     L + P    F
Sbjct: 408 KVIIGYDSFHTSNNRG------CLALFDAST---ASFVQKFNTADEAFTSLYMHPSQVGF 458

Query: 535 FGSANTVSDWLLQINTTRNGDVCLN 609
             S+NT+S+  +    TR   VCLN
Sbjct: 459 VASSNTLSNGRVYYLDTRMYKVCLN 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,824
Number of Sequences: 5004
Number of extensions: 52985
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)