Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0375
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121... 30 2.0
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 30 2.0
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445... 30 2.0
05_03_0226 - 10645036-10646001,10646313-10646828,10646905-106472... 29 3.5
05_01_0180 + 1268129-1268237,1268382-1268731,1268903-1269808,127... 29 3.5
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 29 3.5
11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196 29 4.7
06_03_0228 - 18439659-18440900,18441212-18441736,18441813-184421... 29 4.7
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515 29 4.7
12_01_0588 + 4795620-4796093,4796124-4797476,4797575-4797827,479... 28 6.2
>12_02_0507 +
19810446-19811048,19811220-19811466,19811590-19812125,
19812397-19813620
Length = 869
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 217 RNDESSRNCLCKGQACVCCVNFNMTFVDVGGPGCVH 324
R++E S+N +C VC + TFV G PG VH
Sbjct: 673 RHEEKSQNVMC-----VCDFDMRFTFVLAGWPGSVH 703
>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
Length = 916
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 217 RNDESSRNCLCKGQACVCCVNFNMTFVDVGGPGCVH 324
R++E S+N +C VC + TFV G PG VH
Sbjct: 714 RHEEKSQNVMC-----VCDFDMRFTFVLAGWPGSVH 744
>04_03_0101 -
11242252-11243295,11243607-11244131,11244208-11244513,
11244692-11245231
Length = 804
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 217 RNDESSRNCLCKGQACVCCVNFNMTFVDVGGPGCVH 324
R++E S+N +C VC + TFV G PG VH
Sbjct: 668 RHEEKSQNVMC-----VCDFDMRFTFVLAGWPGSVH 698
>05_03_0226 -
10645036-10646001,10646313-10646828,10646905-10647210,
10647382-10647984
Length = 796
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 217 RNDESSRNCLCKGQACVCCVNFNMTFVDVGGPGCVH 324
R+ E S+N +C VC + TFV G PG VH
Sbjct: 686 RHQEKSQNVMC-----VCDFDMRFTFVLAGWPGSVH 716
>05_01_0180 +
1268129-1268237,1268382-1268731,1268903-1269808,
1270120-1271361
Length = 868
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 217 RNDESSRNCLCKGQACVCCVNFNMTFVDVGGPGCVH 324
R+ E+S+N +C VC + TFV G PG VH
Sbjct: 666 RHKENSQNVMC-----VCDFDMRFTFVLAGWPGSVH 696
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 217 RNDESSRNCLCKGQACVCCVNFNMTFVDVGGPGCVH 324
R+ E S+N +C VC + TFV G PG VH
Sbjct: 675 RHQEKSQNVMC-----VCDFDMRFTFVLAGWPGSVH 705
>11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196
Length = 676
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 217 RNDESSRNCLCKGQACVCCVNFNMTFVDVGGPGCVH 324
R+ E S+N +C VC + TFV G PG VH
Sbjct: 474 RHKEKSQNVMC-----VCDFDMRFTFVLAGWPGSVH 504
>06_03_0228 -
18439659-18440900,18441212-18441736,18441813-18442118,
18442290-18442877
Length = 886
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 217 RNDESSRNCLCKGQACVCCVNFNMTFVDVGGPGCVH 324
R+ E S+N +C VC + TFV G PG VH
Sbjct: 684 RHKEKSQNVMC-----VCDFDMRFTFVLAGWPGSVH 714
>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
Length = 916
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 217 RNDESSRNCLCKGQACVCCVNFNMTFVDVGGPGCVH 324
R+ E S+N +C VC + TFV G PG VH
Sbjct: 714 RHKEKSQNVMC-----VCDFDMRFTFVLAGWPGSVH 744
>12_01_0588 +
4795620-4796093,4796124-4797476,4797575-4797827,
4797989-4798108,4798542-4798564,4798734-4798841
Length = 776
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 516 VRAQDIFWFRKYSFRLAASNQHHKEWRCLPQPA 614
++A+ + Y LA HH RCLP+P+
Sbjct: 157 MKARHYLYLASYDLLLAIELVHHDRRRCLPRPS 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,263,291
Number of Sequences: 37544
Number of extensions: 342371
Number of successful extensions: 829
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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