Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0375
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)                  30   2.1  
SB_11746| Best HMM Match : RVT_1 (HMM E-Value=5e-31)                   30   2.1  
SB_20916| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)                29   3.6  
SB_2711| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_45779| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   4.8  

>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
          Length = 1498

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = -3

Query: 396  TAVYKVFAVRYLNHEPFIWRNIFHVDTTWSTHVNE------CHIKINTANAGLSLAQTVS 235
            T  Y +FAV++ NH  F++R+I       S  ++       CH+ I+  + G+    + S
Sbjct: 909  TCSYTMFAVKWFNHIFFLFRSIERSGVGKSGPISTVKFATLCHVVISGGSDGVLAISSPS 968

Query: 234  TRLVIAL 214
            T L + L
Sbjct: 969  TGLTVRL 975


>SB_11746| Best HMM Match : RVT_1 (HMM E-Value=5e-31)
          Length = 323

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
 Frame = +1

Query: 319 VHMKYVS--PDEGFMVKISYGKNLIHSSKIQGSNPEPICLQVFDKLAEVCAKFSELAPTS 492
           V+ K VS   D G + K  YG    HS++    +      +  D     C  F +L    
Sbjct: 36  VYTKMVSFIEDNGLLYKAQYGFRKSHSTQHATLDIINTIQRNMDNRFYSCGIFLDLKKAF 95

Query: 493 EGIRGCLELEPRIFFGSANTVSDWLLQINTTR 588
           + +   + LE   F+G    ++DW     T R
Sbjct: 96  DTVDHDILLEKLNFYGFRGVINDWFSSYLTNR 127


>SB_20916| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)
          Length = 507

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
 Frame = +1

Query: 421 PIC-LQVFDKLAEVCAKFSE--LAPTSEGIR 504
           PIC L + +K+AE+C+ F+E  L PT++  R
Sbjct: 314 PICSLHLAEKIAEICSAFNESLLKPTAKSTR 344


>SB_2711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 412 NPEPICLQV-FDKLAEVCAKFSELAPTSEGIRGCLEL 519
           NP PIC+ +    L + C KFS ++   +   GC+ +
Sbjct: 3   NPPPICVGIPHVDLLKACVKFSNISYNKDHFGGCISV 39


>SB_45779| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 946

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 343 DEGFMVKISYGKNLIHSSKIQGSNPEPICLQVFDKLAEVCAKFSELAPTSE 495
           ++G +  ++Y    +HS++    N   + L++      VC KF E  PTS+
Sbjct: 338 EDGKLRVVAYASRSLHSAERNMENYSSMKLELLALKWAVCEKFREQQPTSK 388


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,296,647
Number of Sequences: 59808
Number of extensions: 417491
Number of successful extensions: 1152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)