Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0375
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    29   2.4  
AC087079-15|ABF71716.1|  152|Caenorhabditis elegans Hypothetical...    29   3.2  
AY494975-1|AAR87492.1|  486|Caenorhabditis elegans collagen/olfa...    27   9.8  
AF000262-4|AAN60526.2|  486|Caenorhabditis elegans Colmedin (col...    27   9.8  

>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
 Frame = +1

Query: 289 TFVDVGGPGCVHMKYVSPDEGFMVKISYGKNLIHSSKIQGSNPEPICLQVFDKLAEVCAK 468
           T   V GP  +      P    +VKI+     I   ++  S+     +QVF+    V AK
Sbjct: 43  TVFGVNGPLVIVHNVKFPMFNEIVKITLPNGQIRMGQVLESSKNKAVVQVFEGTTGVDAK 102

Query: 469 FSELAPTSEGIRG--CLELEPRIFFGSANTV 555
           F+    T +  R    L++  RIF GS   +
Sbjct: 103 FTTCEFTGDIFRSPVSLDMLGRIFNGSGKPI 133


>AC087079-15|ABF71716.1|  152|Caenorhabditis elegans Hypothetical
           protein Y37E3.19 protein.
          Length = 152

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 350 PSSGETYFMWTQPGPPTSTNVILKLTQQTQACPLHKQFLLDSS 222
           P  G   F +T P   T+      L Q+ Q CP+H +F  D++
Sbjct: 48  PQGGNETFHFTPPHIKTAVPTRSLLRQKHQQCPVHYEFSEDAT 90


>AY494975-1|AAR87492.1|  486|Caenorhabditis elegans
           collagen/olfactomedin domain containingprotein 2
           protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -1

Query: 314 PGPPTSTNVILKLTQQTQACPLHKQFLLDSSLRCSGTSIRNCPNR 180
           PGP      I K      +CP+  + L++   +C       CPNR
Sbjct: 124 PGPVGPPGNIGK-DADCSSCPIRDELLMEREFKCPTIENLECPNR 167


>AF000262-4|AAN60526.2|  486|Caenorhabditis elegans Colmedin
           (collagen plus olfactomedin)family protein 2 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -1

Query: 314 PGPPTSTNVILKLTQQTQACPLHKQFLLDSSLRCSGTSIRNCPNR 180
           PGP      I K      +CP+  + L++   +C       CPNR
Sbjct: 124 PGPVGPPGNIGK-DADCSSCPIRDELLMEREFKCPTIENLECPNR 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,944,202
Number of Sequences: 27780
Number of extensions: 309006
Number of successful extensions: 788
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)