Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0375
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.7  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   4.9  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   8.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.5  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 525 QDIFWFRKYSFRLAASNQH 581
           QD FW  +YS+ L  +  H
Sbjct: 318 QDSFWLEQYSWALFKAMSH 336


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 525 QDIFWFRKYSFRLAASNQH 581
           QD FW  +YS+ L  +  H
Sbjct: 286 QDSFWLEQYSWALFKAMSH 304


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 368 LTAKTLYTAVKFKGATQNRFVFKYSIN*QKSALNLVSWH 484
           +T +  Y  +K  G T+N  +  Y+I+  K  L+  S++
Sbjct: 84  VTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSESYN 122


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -2

Query: 325 CGHNLVHPRQRMSY*N*HSKRRLVPCTNSFY*TRHC 218
           C ++ V+     S+   HS      C N  Y T++C
Sbjct: 22  CSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYC 57


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 229 TRHCVVPVRRLE 194
           TR+C+ P  RLE
Sbjct: 145 TRYCLTPTERLE 156


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 229 TRHCVVPVRRLE 194
           TR+C+ P  RLE
Sbjct: 198 TRYCLTPTERLE 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,728
Number of Sequences: 438
Number of extensions: 3768
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)