Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0375
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP...    28   5.2  
At1g23140.1 68414.m02892 C2 domain-containing protein similar to...    28   5.2  
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati...    28   5.2  
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati...    28   5.2  
At5g57610.1 68418.m07197 protein kinase family protein similar t...    28   6.8  
At3g63500.2 68416.m07153 expressed protein                             28   6.8  
At3g63500.1 68416.m07152 expressed protein                             28   6.8  
At2g41750.1 68415.m05161 DTW domain-containing protein contains ...    27   9.0  

>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
           B subunit / vacuolar proton pump B subunit / V-ATPase 57
           kDa subunit identical to SP|P11574 Vacuolar ATP synthase
           subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
           proton pump B subunit) (V-ATPase 57 kDa subunit)
           {Arabidopsis thaliana}
          Length = 486

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +1

Query: 289 TFVDVGGPGCVHMKYVSPDEGFMVKISYGKNLIHSSKIQGSNPEPICLQVFDKLAEVCAK 468
           T   V GP  +  K   P    +V I  G       ++   + E   +QVF+  + +  K
Sbjct: 21  TVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNK 80

Query: 469 FSELAPTSEGIRG--CLELEPRIFFGSANTVSD 561
           F+ +  T E ++    L++  RIF GS   + +
Sbjct: 81  FTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 113


>At1g23140.1 68414.m02892 C2 domain-containing protein similar to
           zinc finger and C2 domain protein GI:9957238 from
           [Arabidopsis thaliana]
          Length = 165

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 508 CLELEPRIFFGSANTVSDWLLQINTTRNGDV 600
           CL  E RI F +   + D +LQ+    +G+V
Sbjct: 120 CLAEESRIIFSNGKILQDMILQLRNVESGEV 150


>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
           / V-ATPase B subunit, putative / vacuolar proton pump B
           subunit, putative / V-ATPase 57 kDa subunit, putative
           strong similarity to SP|P11574 Vacuolar ATP synthase
           subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
           proton pump B subunit) (V-ATPase 57 kDa subunit)
           {Arabidopsis thaliana}; contains Pfam profiles PF00006:
           ATP synthase alpha/beta family nucleotide-binding
           domain, PF02874: ATP synthase alpha/beta family
           beta-barrel domain
          Length = 485

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +1

Query: 289 TFVDVGGPGCVHMKYVSPDEGFMVKISYGKNLIHSSKIQGSNPEPICLQVFDKLAEVCAK 468
           T   V GP  +  K   P    +V I  G       ++   + E   +QVF+  + +  K
Sbjct: 21  TVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNK 80

Query: 469 FSELAPTSEGIRG--CLELEPRIFFGSANTVSD 561
           F+ +  T E ++    L++  RIF GS   + +
Sbjct: 81  FTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 113


>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
           / V-ATPase B subunit, putative / vacuolar proton pump B
           subunit, putative / V-ATPase 57 kDa subunit, putative
           strong similarity to SP|P11574 Vacuolar ATP synthase
           subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
           proton pump B subunit) (V-ATPase 57 kDa subunit)
           {Arabidopsis thaliana}; contains Pfam profiles PF00006:
           ATP synthase alpha/beta family nucleotide-binding
           domain, PF02874: ATP synthase alpha/beta family
           beta-barrel domain
          Length = 330

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +1

Query: 289 TFVDVGGPGCVHMKYVSPDEGFMVKISYGKNLIHSSKIQGSNPEPICLQVFDKLAEVCAK 468
           T   V GP  +  K   P    +V I  G       ++   + E   +QVF+  + +  K
Sbjct: 21  TVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNK 80

Query: 469 FSELAPTSEGIRG--CLELEPRIFFGSANTVSD 561
           F+ +  T E ++    L++  RIF GS   + +
Sbjct: 81  FTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 113


>At5g57610.1 68418.m07197 protein kinase family protein similar to
            protein kinase [Glycine max] GI:170047, MAP3K delta-1
            protein kinase [Arabidopsis thaliana] GI:2253010;
            contains Pfam profile: PF00069 Eukaryotic protein kinase
            domain
          Length = 1054

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
 Frame = +1

Query: 334  VSPDEGFMVKISYGKNLIH------SSKIQGSNPE-PICLQVFDKLAEV-CAKFSELAPT 489
            ++ D  F ++  +GKN++H      +  +   +P+ PIC     K+ ++  +K  +    
Sbjct: 890  IAMDTAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPIC-----KIGDLGLSKVKQKTLV 944

Query: 490  SEGIRGCLE-LEPRIFFGSANTVSD 561
            S G+RG L  + P +  G +N VS+
Sbjct: 945  SGGVRGTLPWMAPELLSGKSNMVSE 969


>At3g63500.2 68416.m07153 expressed protein
          Length = 1162

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 229  SSRNCLCKGQACVCCVNFNMTFVDVGGPGC-VHMKYVSPDEGFMVKISYGKNLIHSSKIQ 405
            S ++  C    C+ C NF+M        GC V + +   D G  +K SY +N I++S   
Sbjct: 827  SRKDGFCSACMCLVCSNFDMASNTCSWVGCDVCLHWCHTDCG--IKESYIRNGINASGAP 884

Query: 406  G 408
            G
Sbjct: 885  G 885


>At3g63500.1 68416.m07152 expressed protein
          Length = 887

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 229 SSRNCLCKGQACVCCVNFNMTFVDVGGPGC-VHMKYVSPDEGFMVKISYGKNLIHSSKIQ 405
           S ++  C    C+ C NF+M        GC V + +   D G  +K SY +N I++S   
Sbjct: 552 SRKDGFCSACMCLVCSNFDMASNTCSWVGCDVCLHWCHTDCG--IKESYIRNGINASGAP 609

Query: 406 G 408
           G
Sbjct: 610 G 610


>At2g41750.1 68415.m05161 DTW domain-containing protein contains
           Pfam domain, PF03942: DTW domain
          Length = 253

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +1

Query: 379 NLIHSSKIQGSNPEPICLQVFD---KLAEVCAKFSELAPTSEG-IRGCLELE 522
           NL++  +I  SNP P+ L VFD   K A+   K SE+     G +R CL+ E
Sbjct: 114 NLLNHREI--SNPPPLRLIVFDATWKHAKEMVKASEVVLREAGAVRVCLDTE 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,999,387
Number of Sequences: 28952
Number of extensions: 281386
Number of successful extensions: 718
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)