Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0374
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014) 35 0.044
SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32) 32 0.31
SB_50810| Best HMM Match : DUF1452 (HMM E-Value=4.9) 29 1.7
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28) 29 2.9
SB_46990| Best HMM Match : Keratin_B2 (HMM E-Value=4.6) 28 5.1
SB_45529| Best HMM Match : DUF983 (HMM E-Value=0.48) 28 5.1
SB_44603| Best HMM Match : Xan_ur_permease (HMM E-Value=0.00049) 28 5.1
SB_51289| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_41916| Best HMM Match : DUF164 (HMM E-Value=0.8) 27 8.9
>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
Length = 847
Score = 34.7 bits (76), Expect = 0.044
Identities = 27/94 (28%), Positives = 48/94 (51%)
Frame = +3
Query: 132 DGDVTLCLKEKALRYVETLRSKREITLVDGVTLDSKGSPRSARALEPLPEEPKAREAQVE 311
DG T+ LKEK + ++ L+ K E GV+ S+ S A+ LE L +E + + +
Sbjct: 718 DGKRTIALKEKDIE-IQKLQEKLE-----GVSKASEQSKTHAQKLESLNKEQENKLVDAQ 771
Query: 312 SRLVDGVADFLENYVVQFKLPSSAVEGMRRSLDE 413
SRL + A+ + + KL +E + + ++E
Sbjct: 772 SRLEESEAEGRKTAHL-LKLKEQKIESLEKKVEE 804
>SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)
Length = 788
Score = 31.9 bits (69), Expect = 0.31
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +3
Query: 162 KALRYVETLRSKREITLVDGVTLDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADF 341
+ LR ++L E + + ++ KG+ +A L +P+A E ++ RL G+
Sbjct: 152 RVLRITDSLLHGEEEEMRGWLLVEQKGALGTATVTRSLDTDPQASELVIQVRLAGGIGVS 211
Query: 342 LENYV 356
+ NYV
Sbjct: 212 VVNYV 216
>SB_50810| Best HMM Match : DUF1452 (HMM E-Value=4.9)
Length = 214
Score = 29.5 bits (63), Expect = 1.7
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -1
Query: 199 LLDLKVSTYLKAFS-LRHRVTSPSTHSLTTPRTLPRMFGSESCSAAGIAHATPITIKTT 26
+L L+VS K+ L HR TS +T L++ TLP S S S+ TP +I TT
Sbjct: 1 MLILRVSGADKSRDHLNHRHTSTTTSPLSSSSTLPLSSISSSSSSLLSTITTPYSIITT 59
>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
Length = 834
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 184 VSTYLKAFSLRHRVTSPSTHSLT--TPRTLPRMFGSESCSAA 65
V Y K+ S+RHR T H+ T +PR L F C+A+
Sbjct: 66 VKCYAKSASVRHRPTDRRQHAKTSPSPRKLSTHFTEIRCNAS 107
>SB_46990| Best HMM Match : Keratin_B2 (HMM E-Value=4.6)
Length = 782
Score = 27.9 bits (59), Expect = 5.1
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +3
Query: 69 AEQDSDPNILGSVLGVVKECVDGDV-TLCLKEKALRYVETLRSKREITL-VDGVTLDSKG 242
AE ++P + SV G+ E +G++ +LC ++ ALR RE + DG +D
Sbjct: 102 AELPTEPPAIASVHGLDFEA-EGELRSLCQEKAALRATSAATKTREAKVREDGAAIDRAF 160
Query: 243 SPRSARALEPLPEEPKAREAQVES 314
+ + + LP++ A + E+
Sbjct: 161 TDETGYDPQWLPDDHPAYQEYTEA 184
>SB_45529| Best HMM Match : DUF983 (HMM E-Value=0.48)
Length = 294
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 18 KCLVVLMVIGVAWAMPAAEQDSDPNILGSVLGVVKECVDGDVT 146
+CL+VL+ GV W++ E N+ G + +V G +T
Sbjct: 55 RCLIVLVSYGVLWSITGHEMLPGGNLFGIFIILVCAAFGGFIT 97
>SB_44603| Best HMM Match : Xan_ur_permease (HMM E-Value=0.00049)
Length = 453
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 231 DSKGSPRSARALEPLPEEPKAREAQVESRLVDGVAD 338
++ G+ A +EP+P+E +A+VE +DG D
Sbjct: 376 NTDGATNVAIVMEPIPDEKHDGKAEVEGAKLDGKLD 411
>SB_51289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 27.5 bits (58), Expect = 6.7
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +3
Query: 222 VTLDSKGSPRSARALEPLPEEPK-AREAQVESR--LVDGVADFLENYVVQFKLPSSAVEG 392
VT + K + +S EP+P EPK E QVE L ++ F + V++ KL + +E
Sbjct: 266 VTEEEKKAQKSVVMDEPVPTEPKETGEGQVEEEESLSSALSAFGLSNVMRSKLVTDGLEA 325
Query: 393 M 395
+
Sbjct: 326 L 326
>SB_41916| Best HMM Match : DUF164 (HMM E-Value=0.8)
Length = 391
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +1
Query: 250 GLPGPWSLCPRSLRPGKHRSSLGS 321
GLP P S P S RPG RSS S
Sbjct: 275 GLPAPPSPGPGSSRPGSSRSSRSS 298
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,197,415
Number of Sequences: 59808
Number of extensions: 246964
Number of successful extensions: 962
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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