Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0374
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024809-3|AAF59541.3|  455|Caenorhabditis elegans Hypothetical ...    30   1.1  
U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain (p...    28   3.4  
U13875-13|AAA21156.2|  470|Caenorhabditis elegans Hypothetical p...    27   5.9  
Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U00055-6|AAA50724.1|  494|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    27   7.8  

>AC024809-3|AAF59541.3|  455|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.8 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 186 LRSKREITLVDGVTLDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLEN 350
           L  + E+ L D V  D K  PR  R    LPE  ++R    +++ +    DF EN
Sbjct: 393 LEHEAELNLTDNVITDPKMLPRGKRPEFELPEH-RSRLEDAKAQFLKEFGDFEEN 446


>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -1

Query: 229 RVTPSTNVISLLDLKVSTYLKAFSLRHR-----VTSPSTHSLTTPRTLPRMF 89
           ++T +TN+  L +L  ST L     R R     V  P T S  TPR +P +F
Sbjct: 79  KLTIATNLRELFNLTTSTPLPKTPKRFRPKIIPVDKPETTSKPTPRPMPTVF 130


>U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 14 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 63  PAAEQDSDPNI---LGSVLGVVKECVDGDVTLCLKEKALRY 176
           PAA+   DP     L +VLG+ K   D ++    ++ ALRY
Sbjct: 25  PAADHSHDPKKGLHLYNVLGIQKNATDDEIKKAYRKLALRY 65


>U13875-13|AAA21156.2|  470|Caenorhabditis elegans Hypothetical
           protein C26E6.2 protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -1

Query: 214 TNVISLLDLKVSTYLKAFSLRHRVTSPSTHSLTTPRTLPRMFGSESCSAAGIAHA 50
           TNVI  L    +T LKAFSL     S  T  L +  T P    S S +A  ++++
Sbjct: 74  TNVIQTLQALGTTNLKAFSLLLDPQS-QTSQLISEDTRPSASSSPSSTATAVSNS 127


>Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical
           protein F26D10.9a protein.
          Length = 613

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 213 VDGVTLDSKGSPRSARALEPLPEEPKAREAQVESR--LVD 326
           +  + +DSKG P    A++ L E  K+ +  VESR  LVD
Sbjct: 282 ISQLAVDSKGRPNHDEAVKVLEELTKSVQIYVESRDELVD 321


>U00055-6|AAA50724.1|  494|Caenorhabditis elegans Hypothetical
           protein R02F2.8 protein.
          Length = 494

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +3

Query: 21  CLVVLMVIGVAWAMPAAEQDS---DPNIL 98
           C V+L+V+G+A   P   QD+   +PN+L
Sbjct: 186 CAVILVVVGLAHDAPVCAQDAPHEEPNLL 214


>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
           protein Y111B2A.14 protein.
          Length = 1481

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 421 PRASSSDLLMPSTAEDGSLNCTT*FSKKSATPSTSLD 311
           P+ASSS  L PST+   S   +T  +K   + STS +
Sbjct: 823 PKASSSTALRPSTSSTPSQQQSTSTAKAMTSSSTSAE 859


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,079,330
Number of Sequences: 27780
Number of extensions: 173675
Number of successful extensions: 679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)