Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0374
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.3  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.3  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   9.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 446 PASLGHRQTKDHGPHPP 496
           PA++    T  H PHPP
Sbjct: 454 PAAIQIGHTPHHHPHPP 470


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 120 KECVDGDVTLCLKEKALRYVETLRSKREITLVDGVTL 230
           KE +  DV + +       ++ +R+ R+ + +DGVTL
Sbjct: 125 KEGLQFDVLVKVDMTRQYLLQLIRNLRQSSALDGVTL 161


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 253 LPGPWSLCPRSL 288
           LP  W +C RSL
Sbjct: 24  LPNNWRICDRSL 35


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 90  SGQSLVRQQASPTPRRSPLKRPDTSYR 10
           SG+S+    A+P    SP+KR    Y+
Sbjct: 888 SGRSVQLSWAAPYDGNSPIKRYVIEYK 914


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 505 PKNRGMRPMIFSLPMAKRGRSCLIFFF 425
           P+NR     +++L   + G + L+F F
Sbjct: 29  PQNRSQEEDLWNLATDRAGLAILLFLF 55


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 138 DVTLCLKEKAL 170
           D+TLCLK++ L
Sbjct: 23  DITLCLKQENL 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,643
Number of Sequences: 438
Number of extensions: 2002
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)