Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0373
         (710 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2Q414 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  
UniRef50_Q4DLP2 Cluster: Mismatch repair protein MSH4, putative;...    33   6.9  
UniRef50_A0YSN1 Cluster: Putative uncharacterized protein; n=1; ...    33   9.2  

>UniRef50_A2Q414 Cluster: Putative uncharacterized protein; n=1;
           Medicago truncatula|Rep: Putative uncharacterized
           protein - Medicago truncatula (Barrel medic)
          Length = 45

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 326 MDSVLFYFLFLPAIFDHRHNRIARYQCTRYLL 231
           +DS LF F FLPA+F        +Y C  Y++
Sbjct: 2   VDSYLFEFCFLPALFARAQQPCLKYHCANYVI 33


>UniRef50_Q4DLP2 Cluster: Mismatch repair protein MSH4, putative;
           n=3; Trypanosoma cruzi|Rep: Mismatch repair protein
           MSH4, putative - Trypanosoma cruzi
          Length = 1264

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 257 RYQCTRYLLGHDDSELAISKICQLISNQDLTNSLSKFNH 141
           RY C  +L   +++  A+ +  QL+ N D+  ++S F+H
Sbjct: 460 RYDCVEWLRQEEETLKALRRSLQLLGNNDIERTVSNFSH 498


>UniRef50_A0YSN1 Cluster: Putative uncharacterized protein; n=1;
           Lyngbya sp. PCC 8106|Rep: Putative uncharacterized
           protein - Lyngbya sp. PCC 8106
          Length = 718

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -1

Query: 242 RYLLGHDDSELAISKICQLISNQDLTNSLSKFNHIH 135
           RYL G DD  L   +I QL+  Q   N LS FN ++
Sbjct: 640 RYLYGQDDEILWYDQILQLMQEQAPQNPLSNFNRLN 675


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,718,839
Number of Sequences: 1657284
Number of extensions: 11099001
Number of successful extensions: 21518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21510
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)