Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0373
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    29   0.87 
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    26   4.6  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   8.1  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    25   8.1  

>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 254 YQCTRYLLGHDDSELAISKICQLI 183
           Y C R  LG D  ++A++ IC L+
Sbjct: 283 YNCARLYLGVDYGDIAVANICMLV 306


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 326 MDSVLFYFLFLPAIFDHRHNRIARYQCT 243
           M ++LFYF F+  IF H  N      CT
Sbjct: 1   MQTLLFYFFFINLIFAHDLNVKTYKPCT 28


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 252 VSSDAIVPMIEYRRQK*KIK 311
           V +DA  PM+ YR+ K K+K
Sbjct: 155 VPTDAYTPMVSYRKLKSKLK 174


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 341 LAQWVGIVLMNKDP 382
           LAQWV ++L N DP
Sbjct: 343 LAQWVELILQNPDP 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,921
Number of Sequences: 5004
Number of extensions: 49884
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)