Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0373
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) 31 0.92
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_51256| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_22726| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_32088| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_18814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27) 29 3.7
SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 28 6.5
SB_56845| Best HMM Match : zf-CCHC (HMM E-Value=0.00074) 28 6.5
SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 28 6.5
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 28 6.5
SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32) 28 6.5
>SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
Length = 522
Score = 31.1 bits (67), Expect = 0.92
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = -3
Query: 438 FYNAIC-------HISDVTKNGEHTMGSLFMRTMPTHWAKQPF*NGLRAFLFFISACDIR 280
FYNAIC HISD+ + + S +T PTH +Q N ++ F CD
Sbjct: 15 FYNAICRICNKRGHISDICMSSINRKKSTPSKTKPTHCVEQEMENEIQCLHIF--KCDTT 72
Query: 279 S 277
S
Sbjct: 73 S 73
>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 881
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = -3
Query: 360 MPTHWAKQPF*NGLRAFLFFISACDIRSSAQSHR*IPMHS--VSFRP**FRTCN-FKDMS 190
MPTH P + + +++CD S Q+HR P H S +P +C+ M
Sbjct: 486 MPTHREPPPHPSFASHQPYHVTSCDALSGMQTHREPPPHPSFASHQPYHVTSCDALSGMQ 545
Query: 189 AHFQPRSNK*SFKIQPY 139
H +P + QPY
Sbjct: 546 THREPPPHPSFASHQPY 562
>SB_51256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = +2
Query: 332 NGCLAQWVGIVLMNKDPIVCSPFFVTSLI*HIAL*NSAVFKCTSTSYFCTGSKVVCAKIH 511
+G +AQW G+ NK P+V + HI + K T T + C +H
Sbjct: 106 SGSIAQWYGLRFSNKRPVVRIQTYTPMTPNHITTLYPCMIKRLPTCTPVTLPFISCTPVH 165
Query: 512 CYPH 523
P+
Sbjct: 166 SPPN 169
>SB_22726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = -3
Query: 438 FYNAIC-------HISDVTKNGEHTMGSLFMRTMPTHWAKQPF*NG 322
FYNAIC HISD+ + + S +T PTH +Q G
Sbjct: 131 FYNAICRICNKRGHISDICMSSINRKKSTASKTKPTHCVEQEISEG 176
>SB_32088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = +2
Query: 332 NGCLAQWVGIVLMNKDPIVCSPFFVTSLI*HIAL*NSAVFKCTSTSYFCTGSKVVCAKIH 511
+G +AQW G+ NK P+V + HI + K T T + C +H
Sbjct: 106 SGSIAQWYGLRFSNKRPVVRIQTYTPMTPNHITTLYPCMIKRLPTCTPVTLPFISCTPVH 165
Query: 512 CYPH 523
P+
Sbjct: 166 SPPN 169
>SB_18814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 281 DHRHNRIARYQCTRYLLGHDDSELAISKICQLISNQDLTNSLSKFNHI 138
D NR+ +C +LL S+ ++ I + N+ L S+S+FN +
Sbjct: 5 DSESNRLLYGECIPFLLSVLSSKKSVESIVLAVDNKILYASMSEFNRL 52
>SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27)
Length = 1307
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = -3
Query: 438 FYNAIC-------HISDVTKNGEHTMGSLFMRTMPTHWAKQPF*NG 322
FYNAIC HISD+ + + S +T PTH +Q G
Sbjct: 131 FYNAICRICNKRGHISDICMSSINRKKSTASKTKPTHCVEQEISEG 176
>SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 425
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = -3
Query: 438 FYNAIC-------HISDVTKNGEHTMGSLFMRTMPTHWAKQPF*NG 322
FYNAIC HISD+ + + S +T PTH +Q G
Sbjct: 224 FYNAICRICNKRGHISDICMSSINRKKSTPSKTKPTHCVEQEISEG 269
>SB_56845| Best HMM Match : zf-CCHC (HMM E-Value=0.00074)
Length = 231
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = -3
Query: 438 FYNAIC-------HISDVTKNGEHTMGSLFMRTMPTHWAKQPF*NG 322
FYNAIC HISD+ + + S +T PTH +Q G
Sbjct: 96 FYNAICRICNKRGHISDMCMSSTNRKKSTPSKTKPTHCVEQDISEG 141
>SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1084
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = -3
Query: 438 FYNAIC-------HISDVTKNGEHTMGSLFMRTMPTHWAKQPF*NG 322
FYNAIC HISD+ + + S +T PTH +Q G
Sbjct: 212 FYNAICRICNKRGHISDICMSSINRKKSTPSKTKPTHCVEQEISEG 257
>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1122
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = -3
Query: 438 FYNAIC-------HISDVTKNGEHTMGSLFMRTMPTHWAKQPF*NG 322
FYNAIC HISD+ + + S +T PTH +Q G
Sbjct: 246 FYNAICRICNKRGHISDICMSSINRKKSTPSKTKPTHCVEQEISEG 291
>SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)
Length = 1086
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = -3
Query: 438 FYNAIC-------HISDVTKNGEHTMGSLFMRTMPTHWAKQPF*NG 322
FYNAIC HISD+ + + S +T PTH +Q G
Sbjct: 213 FYNAICRICNKRGHISDICMSSINRKKSTPSKTKPTHCVEQEISEG 258
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,341,248
Number of Sequences: 59808
Number of extensions: 351093
Number of successful extensions: 758
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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