Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0373
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03610.1 68415.m00321 F-box family protein contains F-box dom...    28   7.0  
At5g26810.1 68418.m03199 pectinesterase family protein contains ...    27   9.3  

>At2g03610.1 68415.m00321 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 216

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 196 IFEIASSESSWPKRYRVH 249
           IF +A+S  +WPKRY V+
Sbjct: 187 IFNLATSRITWPKRYGVY 204


>At5g26810.1 68418.m03199 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 293

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 319 PCFFIFYFCLRYSIIGTIASLD 254
           PC FIF   L  S IGT+ +LD
Sbjct: 2   PCLFIFIALLLSSCIGTLKALD 23


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,007,689
Number of Sequences: 28952
Number of extensions: 248737
Number of successful extensions: 502
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)