Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0372
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.026
SB_41575| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_17954| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17)                28   6.9  
SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_39231| Best HMM Match : zf-C2H2 (HMM E-Value=3.4e-31)               28   9.1  
SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.1  

>SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1608

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = -3

Query: 433 LLRICNSVPEPRI*SRTRRSCSAGPGTVGARNSVNCSARTDPSSPVSNLN*FLSCLP 263
           L+ + NSVP  ++  +     S G G   A  S+  S  T PSSP++NL   LS +P
Sbjct: 299 LVSLLNSVPASQLAGKRIGMFSYGSGLASAMFSIRVSPNTSPSSPLTNLVGSLSDVP 355


>SB_41575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 330 FTEFRAPT-VPGPAEQLLRVRLYIRGSGTELQMRSR 434
           F + R PT V  P E L + R+Y RG G ++++R++
Sbjct: 22  FEQTRCPTYVLPPGEDLRKTRVYTRGLGEDMRIRTK 57



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 348 PTVPGPAEQLLRVRLYIRGSGTELQMRSR 434
           P V  P E L + R+Y RG G ++++R++
Sbjct: 81  PYVLPPGEDLRKTRVYTRGLGEDMRIRTK 109


>SB_17954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 457 DTSWLQYAIPLDVEK-QRPQSCFMYQQANVTSQQCLPEDFINKTVPCERFVYENDYSFVK 633
           ++S+ +  I L+ EK Q  Q     +Q     QQ + ED+   T    R  Y+  Y+++K
Sbjct: 182 NSSFEKLYIVLNTEKTQERQKLIRERQLQTDEQQRIREDYGEPTKKRRRHWYDFHYNYIK 241

Query: 634 E 636
           E
Sbjct: 242 E 242


>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2201

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
 Frame = +1

Query: 382 ECGFIFEAQEQNYRCEVDGCELRFNDTSWLQYAIPLDVEKQRPQSCFMYQ---QANVTSQ 552
           EC   FEA E N+R  +    L   D   +++ +          S   +Q     N  SQ
Sbjct: 710 ECSLCFEAMEINWRIRIKNTTLNEPD-GCMEFTLCQPFSDGGQLSATKHQFDGPPNPLSQ 768

Query: 553 QCLPEDFINKTVPCERFVYENDYSFVKEFN 642
             +  D I+ T   + FV  N  SF+K  +
Sbjct: 769 TVIDADTIDLTCHGKGFVSVNPASFLKSLS 798


>SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17)
          Length = 348

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 636 LFDKRIIVFVNKSLARHSFIDEVFRQTLLTRNVCLLVHEAGLRTLFLHVQRD 481
           L +KRI +  NK   RH F+  +F       +VC ++  A    L +H+  D
Sbjct: 218 LAEKRIFLTANK--TRHPFLVNLFACFQTQEHVCFVMEYAPGGDLMMHIHAD 267


>SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 733

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 624 FCQRVQPCLPRMETSASRNHPLILEWFVAMLFT 722
           FC  V P    + T  +R   +IL WF+ +L+T
Sbjct: 133 FCAVVLPMKRDLITGKTRTATIILTWFLGILYT 165


>SB_39231| Best HMM Match : zf-C2H2 (HMM E-Value=3.4e-31)
          Length = 505

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 406 QEQNYRCEVDGCELRFNDTSWLQ 474
           + + Y C ++GCE R+ D S L+
Sbjct: 465 ERKPYHCRIEGCEKRYTDPSSLR 487


>SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1704

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 409  EQNYRCEVDGCELRFNDTSWLQYAIPLDVEKQRPQSC 519
            E+ + C V+GCE RF   S L+  I      +RP SC
Sbjct: 1089 ERPHGCPVEGCEKRFTKASKLKLHIRSHT-GERPFSC 1124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,307,072
Number of Sequences: 59808
Number of extensions: 449411
Number of successful extensions: 1225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)