Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0372
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97194-2|AAN84846.1|  806|Caenorhabditis elegans Prion-like-(q/n...    29   3.4  
U97194-1|AAK68236.1|  788|Caenorhabditis elegans Prion-like-(q/n...    29   3.4  
AF170425-1|AAF89696.1|  788|Caenorhabditis elegans putative MAP-...    29   3.4  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z69883-6|CAA93744.2|  461|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U42847-4|AAF23186.1| 1073|Caenorhabditis elegans Immunoglobulin-...    28   7.9  

>U97194-2|AAN84846.1|  806|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
           isoform b protein.
          Length = 806

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 382 ECGFIFEAQEQNYRCEVDGCELRFNDTSWLQYAI 483
           +C  +     Q + C  DGCE RF  T+ L+Y I
Sbjct: 418 KCELVEVDVAQLHDCHYDGCEKRFQKTTDLEYHI 451


>U97194-1|AAK68236.1|  788|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
           isoform a protein.
          Length = 788

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 382 ECGFIFEAQEQNYRCEVDGCELRFNDTSWLQYAI 483
           +C  +     Q + C  DGCE RF  T+ L+Y I
Sbjct: 400 KCELVEVDVAQLHDCHYDGCEKRFQKTTDLEYHI 433


>AF170425-1|AAF89696.1|  788|Caenorhabditis elegans putative
           MAP-like protein protein.
          Length = 788

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 382 ECGFIFEAQEQNYRCEVDGCELRFNDTSWLQYAI 483
           +C  +     Q + C  DGCE RF  T+ L+Y I
Sbjct: 400 KCELVEVDVAQLHDCHYDGCEKRFQKTTDLEYHI 433


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 470 CSTLSRWT-WRNS-VLNPASCTSKQTLRVSSVCLKTS 574
           C  LS W+ W  +   N  +C + QTL  +  CLKT+
Sbjct: 708 CRLLSSWSEWTTTGTCNQTACGTCQTLTYTRTCLKTN 744


>Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical protein
            T06D8.10 protein.
          Length = 1490

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 544  TSQQCLPEDFINKTVPCERFVYENDYSFVK 633
            T+  C+  +   +   C+RF YEND S  K
Sbjct: 1331 TTMSCIIAEQFGRLKKCDRFYYENDNSAAK 1360


>Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical protein
            T06D8.10 protein.
          Length = 1490

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 544  TSQQCLPEDFINKTVPCERFVYENDYSFVK 633
            T+  C+  +   +   C+RF YEND S  K
Sbjct: 1331 TTMSCIIAEQFGRLKKCDRFYYENDNSAAK 1360


>Z69883-6|CAA93744.2|  461|Caenorhabditis elegans Hypothetical
           protein C27C12.2 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 406 QEQNYRCEVDGCELRFNDTSWLQYAIPLDVEKQRPQSCFMYQQA 537
           Q++ Y+C  DGC+ RF+ +  L   I +    Q+P  C +  +A
Sbjct: 370 QDRPYKCPRDGCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRA 412


>U42847-4|AAF23186.1| 1073|Caenorhabditis elegans
           Immunoglobulin-like cell adhesionmolecule family protein
           1 protein.
          Length = 1073

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 505 RPQSCFMYQQANVTSQQCLPEDFINKTV 588
           RP    +Y  +  +  +CLPEDF  +TV
Sbjct: 557 RPVKQSIYASSATSESKCLPEDFCTQTV 584


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,597,796
Number of Sequences: 27780
Number of extensions: 346407
Number of successful extensions: 838
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)