Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0372
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49790.1 68414.m05583 F-box family protein-related contains w...    29   4.3  
At2g34290.1 68415.m04195 protein kinase family protein contains ...    28   7.4  
At5g27790.1 68418.m03332 protein kinase family protein contains ...    27   9.8  

>At1g49790.1 68414.m05583 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain
          Length = 283

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 177 ETPCRLVNLEDRYHVFTTKTIMLHRN 100
           E  C++VNLEDR  +  T T  LH N
Sbjct: 198 ERSCQIVNLEDRLVLAVTYTTSLHWN 223


>At2g34290.1 68415.m04195 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 265

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 397 FEAQEQNYRCEVDGCELRFNDTSWLQYAIPLDVEKQRPQSCFM 525
           F+   +  +C   G E R ND  +++Y IP++       S FM
Sbjct: 52  FKGCSRIVQCYGSGVEQRLNDKGYVEYTIPMEYAAGGSLSDFM 94


>At5g27790.1 68418.m03332 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 327

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 421 RCEVDGCELRFNDTSWLQYAIPLD 492
           +C  +G + RFND  +++Y IP++
Sbjct: 79  QCYGNGVKQRFNDKGYVEYMIPME 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,520,422
Number of Sequences: 28952
Number of extensions: 311740
Number of successful extensions: 696
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)