Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0371
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...   114   1e-26
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    27   2.6  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        27   3.4  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    27   3.4  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    26   4.5  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    25   7.9  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    25   7.9  

>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score =  114 bits (275), Expect = 1e-26
 Identities = 50/90 (55%), Positives = 67/90 (74%)
 Frame = +2

Query: 338 LKTNWFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKD 517
           +K  WF E  +MWPG   + +VK+VL+  KSKYQ++ VF++ + G VLVLDG IQ T++D
Sbjct: 11  IKDGWFREINNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERD 70

Query: 518 EFSYQEMISFLPLCCHKNPENVLIVGGGDG 607
           EFSYQEMI+ L L  H NP+ VL++GGGDG
Sbjct: 71  EFSYQEMIAHLALNSHPNPKKVLVIGGGDG 100



 Score = 31.1 bits (67), Expect = 0.16
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +1

Query: 622 EVAKHPQVKHIVLVEIDDRVIELSKRY 702
           EV KH  V+  +L +ID+ VI++SK+Y
Sbjct: 105 EVVKHECVEEAILCDIDEDVIKVSKQY 131


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 411 YCTQKNQNTRISKFLIQPVWGRFLSWTESYN 503
           +CTQK   + +SKF   P   R +  TE+ N
Sbjct: 20  FCTQKLHRSTVSKFFEHPTSKRSIGVTENGN 50


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +2

Query: 371 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKD 517
           +W G  +   +K +L   K K  N+  FD   L  V+    +++ +  D
Sbjct: 55  LWDGHVWIGSLKNILIYLKQKGYNLDNFDAKQLANVMAFTSLLEGSVND 103


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 516 SF*VHCMI-PSKTRTFPKLVVSKTWIFWY 433
           SF V  +I PS+T    K  V KTW +W+
Sbjct: 806 SFSVLSLICPSRTLIIDKACVEKTWPYWW 834


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 422 EKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLPLCCHKNPENVLIV 592
           +K+K     + D  SLG   +   +I C  K     + +I  + L CH  PE VL V
Sbjct: 190 QKTKPTQQAIRDLRSLG---ITPDLIACRCKQPLE-KSVIDKISLFCHVGPEQVLAV 242


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 500 QCTQKDEFSYQEMISFLP 553
           +C+QKD   YQE  SF P
Sbjct: 326 RCSQKDAQIYQEWYSFFP 343


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 500 QCTQKDEFSYQEMISFLP 553
           +C+QKD   YQE  SF P
Sbjct: 280 RCSQKDAQIYQEWYSFFP 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,884
Number of Sequences: 5004
Number of extensions: 67054
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)