Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0371
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical... 113 1e-25
AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine sy... 113 1e-25
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 29 4.3
Z81124-11|CAB03370.2| 306|Caenorhabditis elegans Hypothetical p... 23 5.2
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 28 5.6
AF043692-2|AAB97531.1| 253|Caenorhabditis elegans Hypothetical ... 28 7.4
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 27 9.8
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ... 27 9.8
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ... 27 9.8
>AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical
protein Y46G5A.19 protein.
Length = 314
Score = 113 bits (272), Expect = 1e-25
Identities = 48/78 (61%), Positives = 64/78 (82%)
Frame = +2
Query: 374 WPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 553
WPG FS +VK+VL EKSKYQ++ VF++T+ G VLVLDGI+Q T++DEFSYQEM++ LP
Sbjct: 43 WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102
Query: 554 LCCHKNPENVLIVGGGDG 607
+ H +P+ VLI+GGGDG
Sbjct: 103 MFAHPDPKRVLIIGGGDG 120
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 622 EVAKHPQVKHIVLVEIDDRVIELSKRY 702
EV KH V+ + + EID+ VI+++K++
Sbjct: 125 EVLKHESVEKVTMCEIDEMVIDVAKKF 151
>AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine
synthase protein.
Length = 314
Score = 113 bits (272), Expect = 1e-25
Identities = 48/78 (61%), Positives = 64/78 (82%)
Frame = +2
Query: 374 WPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 553
WPG FS +VK+VL EKSKYQ++ VF++T+ G VLVLDGI+Q T++DEFSYQEM++ LP
Sbjct: 43 WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102
Query: 554 LCCHKNPENVLIVGGGDG 607
+ H +P+ VLI+GGGDG
Sbjct: 103 MFAHPDPKRVLIIGGGDG 120
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 622 EVAKHPQVKHIVLVEIDDRVIELSKRY 702
EV KH V+ + + EID+ VI+++K++
Sbjct: 125 EVLKHESVEKVTMCEIDEMVIDVAKKF 151
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 308 NY*SKKKMDKLKTNWFTESCDMWPGGTFSFEVKEV 412
N ++ ++K+ NW CD+W T F V+++
Sbjct: 161 NVEDRESIEKIVDNWRNAPCDIWNENTVVFSVQKL 195
>Z81124-11|CAB03370.2| 306|Caenorhabditis elegans Hypothetical
protein T21B4.1 protein.
Length = 306
Score = 23.4 bits (48), Expect(2) = 5.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 275 LILDFNCRLGTNY*SKKKMDKLKTNW 352
++L +N +GT + S++K+ L NW
Sbjct: 221 VLLFYNQIIGTKFASERKIGMLLQNW 246
Score = 23.4 bits (48), Expect(2) = 5.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 437 QNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLPLCCHKNPENVLIVGGGDG 607
QN F TT L ++ + C +++ + M+S L C N ++VG +G
Sbjct: 244 QNWSNFGTTPL---IIQISYLLCNKRNTRAIMVMLSPRRLICRNCRRNQVVVGPAEG 297
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
F18C12.2b protein.
Length = 2271
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 350 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQ-----CTQK 514
W+ D G SFE + L+TEK+ ++ Q++ + K + L + Q C QK
Sbjct: 983 WYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIW-AAGMDKWMSLAAVPQFRWTVCQQK 1041
Query: 515 DE 520
D+
Sbjct: 1042 DQ 1043
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
F18C12.2a protein.
Length = 2279
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 350 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQ-----CTQK 514
W+ D G SFE + L+TEK+ ++ Q++ + K + L + Q C QK
Sbjct: 983 WYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIW-AAGMDKWMSLAAVPQFRWTVCQQK 1041
Query: 515 DE 520
D+
Sbjct: 1042 DQ 1043
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 350 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQ-----CTQK 514
W+ D G SFE + L+TEK+ ++ Q++ + K + L + Q C QK
Sbjct: 983 WYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIW-AAGMDKWMSLAAVPQFRWTVCQQK 1041
Query: 515 DE 520
D+
Sbjct: 1042 DQ 1043
>AF043692-2|AAB97531.1| 253|Caenorhabditis elegans Hypothetical
protein C17F3.3 protein.
Length = 253
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 616 QGEVAKHPQVKHIVLVEIDDRVIELSKRY 702
+GEV + V++ ++ E+ DRV ++ KRY
Sbjct: 200 KGEVKNNALVENPIVTEMSDRVSKIDKRY 228
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 609 LPSPPPTMSTFSGFLWQHKGKNDIIS 532
+P+PPPT + F W H G II+
Sbjct: 292 IPNPPPTQK-LTAFTWAHNGNVVIIA 316
>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
protein C36B7.5b protein.
Length = 1148
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +3
Query: 330 WTN*KPTGLRNHAICGLGVLSHSK---SKKYCTQKNQNTRISKFLIQ-PVWGRFLSWTES 497
WT P L A CG+G + ++ + + C + K L+ P W ++SWT
Sbjct: 351 WTLWSPWSLCT-ATCGVGEIQRNRVCQTGRNCDGPSVEVEACKALLPCPTWSSWMSWTGC 409
Query: 498 YNALRK 515
N+ K
Sbjct: 410 GNSCGK 415
>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
protein C36B7.5a protein.
Length = 1121
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +3
Query: 330 WTN*KPTGLRNHAICGLGVLSHSK---SKKYCTQKNQNTRISKFLIQ-PVWGRFLSWTES 497
WT P L A CG+G + ++ + + C + K L+ P W ++SWT
Sbjct: 351 WTLWSPWSLCT-ATCGVGEIQRNRVCQTGRNCDGPSVEVEACKALLPCPTWSSWMSWTGC 409
Query: 498 YNALRK 515
N+ K
Sbjct: 410 GNSCGK 415
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,762,872
Number of Sequences: 27780
Number of extensions: 372119
Number of successful extensions: 948
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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