Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0371
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   3.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   3.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   3.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   3.7  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   8.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 194 FALLTNSTLLNSHFTITIYMSKDMIRYI*QTETLDNDLL 78
           +A+  N T +NS   I++  SK  I+   QTE  ++  L
Sbjct: 541 YAMKMNETYINSGNKISLATSKSFIKANSQTEVSNSKKL 579


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 488 PRQEPSPNWLYQKLGYSGILI 426
           P+  P PNW   K G  G  I
Sbjct: 107 PKLTPYPNWAQNKAGACGSAI 127


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 684 NYAVINFNQNNVFHLRMFGDFPLRHLPSPPP 592
           NY   N+N NN   L+ +    +  +P P P
Sbjct: 96  NYNNNNYNNNNYKKLQYYNINYIEQIPIPVP 126


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 684 NYAVINFNQNNVFHLRMFGDFPLRHLPSPPP 592
           NY   N+N NN   L+ +    +  +P P P
Sbjct: 96  NYNNNNYNNNNYKKLQYYNINYIEQIPIPVP 126


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 684 NYAVINFNQNNVFHLRMFGDFPLRHLPSPPP 592
           NY   N+N NN   L+ +    +  +P P P
Sbjct: 96  NYNNNNYNNNNYKKLQYYNINYIEQIPIPVP 126


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 684 NYAVINFNQNNVFHLRMFGDFPLRHLPSPPP 592
           NY   N+N NN   L+ +    +  +P P P
Sbjct: 96  NYNNNNYNNNNYKKLQYYNINYIEQIPIPVP 126


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 684 NYAVINFNQNNVFHLRMFGDFPLRHLPSPPPTMSTF 577
           NY  +++N N +  + +   FP+ +   PP  M  F
Sbjct: 330 NYKPLHYNINYIEQIPVPVPFPVYYGNFPPRPMGPF 365


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 190 PFLRTQHY*THISQSRYIC 134
           P   T+HY TH  +  Y C
Sbjct: 104 PARLTRHYRTHTGEKPYQC 122


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 570 IQKMYS*SVEVMGGVARG 623
           + + Y   VEV+GG +RG
Sbjct: 128 VAQAYKVDVEVIGGASRG 145


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 570 IQKMYS*SVEVMGGVARG 623
           + + Y   VEV+GG +RG
Sbjct: 128 VAQAYKVDVEVIGGASRG 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,134
Number of Sequences: 438
Number of extensions: 4664
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)