BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0369
(683 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF042732-3|AAC18058.1| 496|Anopheles gambiae diphenol oxidase-A... 25 1.7
AY903308-1|AAX48940.1| 241|Anopheles gambiae female-specific do... 23 6.8
AY903307-1|AAX48939.1| 283|Anopheles gambiae male-specific doub... 23 6.8
AY536865-1|AAT07965.1| 650|Anopheles gambiae tryptophan transpo... 23 6.8
AJ626713-1|CAF25029.1| 650|Anopheles gambiae tryptophan transpo... 23 6.8
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein. 23 9.0
AJ276486-1|CAB90818.1| 364|Anopheles gambiae serine protease pr... 23 9.0
>AF042732-3|AAC18058.1| 496|Anopheles gambiae diphenol oxidase-A2
protein.
Length = 496
Score = 25.4 bits (53), Expect = 1.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 679 LRNCWKGRSVRASSLLRQLAKGGCAARRLKLGNARVFPVTTL*ND 545
LRN ++G++V + LLR + KL N VFP T N+
Sbjct: 203 LRNDFEGQAVLINCLLRNYLHYSLYDQADKLVNKSVFPETASNNE 247
>AY903308-1|AAX48940.1| 241|Anopheles gambiae female-specific
doublesex protein protein.
Length = 241
Score = 23.4 bits (48), Expect = 6.8
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 354 PSLRHHGPEP-HSGQTEHY*TSPAAV 428
P + HH PEP H G T H SP V
Sbjct: 138 PGVPHHVPEPQHMGAT-HSCVSPEPV 162
>AY903307-1|AAX48939.1| 283|Anopheles gambiae male-specific
doublesex protein protein.
Length = 283
Score = 23.4 bits (48), Expect = 6.8
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 354 PSLRHHGPEP-HSGQTEHY*TSPAAV 428
P + HH PEP H G T H SP V
Sbjct: 138 PGVPHHVPEPQHMGAT-HSCVSPEPV 162
>AY536865-1|AAT07965.1| 650|Anopheles gambiae tryptophan
transporter protein.
Length = 650
Score = 23.4 bits (48), Expect = 6.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 610 CAARRLKLGNARVFPVTTL*NDGQ*IVI 527
C A + LGN FP T L N G VI
Sbjct: 88 CIALSVGLGNVWRFPFTALENGGGAFVI 115
>AJ626713-1|CAF25029.1| 650|Anopheles gambiae tryptophan
transporter protein.
Length = 650
Score = 23.4 bits (48), Expect = 6.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 610 CAARRLKLGNARVFPVTTL*NDGQ*IVI 527
C A + LGN FP T L N G VI
Sbjct: 88 CIALSVGLGNVWRFPFTALENGGGAFVI 115
>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
Length = 3361
Score = 23.0 bits (47), Expect = 9.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 297 HGHDDVFLMSFIQVHTEVLDLPSSCGSNLSLRVLEQ 190
HG+ ++ + +HT+ L+ G+NL+L L Q
Sbjct: 3288 HGNGNILMERLKALHTDALEEIELHGANLALDNLFQ 3323
>AJ276486-1|CAB90818.1| 364|Anopheles gambiae serine protease
protein.
Length = 364
Score = 23.0 bits (47), Expect = 9.0
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -2
Query: 109 PCTAPSTKYLRHEPARSASHVAPYLGCQQRSHNST 5
PC PS EP ++ S+V L SH T
Sbjct: 30 PCQTPSGTAGTCEPVKNCSYVRKILKSPDFSHYDT 64
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,184
Number of Sequences: 2352
Number of extensions: 16103
Number of successful extensions: 31
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -