Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0368
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    28   0.95 
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    26   3.8  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   5.1  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   5.1  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   6.7  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    25   6.7  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   6.7  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   8.8  

>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 18/46 (39%), Positives = 28/46 (60%)
 Frame = -1

Query: 619 KCSFLTRSAKLRVNKLPVCFFSKIV*ISFKSVVGEGLDLQIRVDLS 482
           K  FL R A+  ++ L V FF+    + F+ V G GL+L++ +DLS
Sbjct: 38  KKGFLPRDAQKVISSLNVYFFTPC--LVFEKV-GNGLNLKMLIDLS 80


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 574 LPVCFFSKIV*ISFKSVVGEGLDLQIRVDLSDLFAYDVGDIPQTLLYGVLSHVPLE 407
           LP+  +S  V       V E  D  I + ++ + A +  + P TLL  V   +P+E
Sbjct: 3   LPIAVYSLSVKGKDVPAVEESTDASIHLTMASIDAGEKSNKPTTLLVKVRPRIPVE 58


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 413 WDMAKYPIKQSLRNIADIISKQVGQIDADLKVKSF 517
           W +  +  +    NI +I+  +   IDAD+ V++F
Sbjct: 318 WTLGYHSCRWGYTNITEIMDVRQNYIDADIPVETF 352


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 302 RKVAQYLGEVLEDQRDKLHENLMAN 376
           +KVAQ L E+L DQR  L  + +AN
Sbjct: 921 KKVAQRLTELLSDQRVHLPSSKIAN 945


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 197 NYKFPIPDLKVGTLDQLVGLSD--DLGKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLM 370
           N  FP+  LK     Q+   SD  + GKL    +G+ +K  +Y   + +   D     L 
Sbjct: 68  NEFFPLLSLKKEITLQIERCSDPNERGKLVNEAKGLKKKTEEYNKIISKVTNDLYQYCLA 127

Query: 371 ANNSDLPT 394
             N+ LPT
Sbjct: 128 VPNTTLPT 135


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
 Frame = -3

Query: 455 YSADSALWGT*-PCPIGSESNKWVGHCYWPSSFHGAYRADLQVPLQGTGLPSWSHLRRKY 279
           ++ D A WG    C  GS +N  V     P   HG         L G  LPS  HL   Y
Sbjct: 90  FNLDPAKWGVNVQCLSGSPANMQVYQAIMPP--HGR--------LMGLDLPSGGHLSHGY 139

Query: 278 QACPDHLTAPPT 243
           Q     ++A  T
Sbjct: 140 QTDTKKISAVST 151


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = -2

Query: 303 LVTPSTKVSSLPRSSDSPTN*SKVPTLRSGIGNL*LTLRLPDLVALFRVSQVC*QVLSPG 124
           L  PS  V SLPR+S+SP+     P  +       +   + D+ A F  SQ      +  
Sbjct: 734 LSAPSD-VGSLPRASNSPSRPVMHPNTQG------INTEIKDMAAQFPNSQTGGLTPNSW 786

Query: 123 ALITQYSVIFTTR 85
           ++ T  SV FTT+
Sbjct: 787 SMNTNVSVPFTTQ 799


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 269  PDHLTAPPTDPKFPP 225
            PDHL AP   P  PP
Sbjct: 1009 PDHLVAPRVKPLLPP 1023


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,505
Number of Sequences: 5004
Number of extensions: 51743
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)